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Platform GPL5281 Query DataSets for GPL5281
Status Public on May 25, 2007
Title AFFY Human Phase3 v1.0 - C48
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol Affymetrix standard array manufacture protocol.
Please refer to http://www.affymetrix.com/technology/manufacturing/index.affx for details.
 
 
Web link http://transcriptome.affymetrix.com/publication/hs_whole_genome
Submission date May 23, 2007
Last update date Jul 18, 2007
Contact name Thomas R Gingeras
E-mail(s) tom_gingeras@affymetrix.com
Organization name Affymetrix, Inc.
Street address 3380 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (14) GSM191236, GSM191512, GSM191785, GSM192058, GSM192328, GSM192601 
Series (1)
GSE7576 RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription

Data table header descriptions
ID chip_coord_genomic_coord
CHIP_COORD chip coordinate
SEQUENCE probe sequence
RANGE_GB chromosome accession and version upon which probes are mapped
RANGE_START start position of mapped probe relative to RANGE_GB
RANGE_END end position of mapped probe relative to RANGE_GB
RANGE_STRAND chromosomal stand

Data table
ID CHIP_COORD SEQUENCE RANGE_GB RANGE_START RANGE_END RANGE_STRAND
x751_y27_chr1_82258 x751_y27 GCATAGTTGCTTCCTGATCAGCTCT NC_000001.8 82258 82282 +
x2498_y475_chr1_82263 x2498_y475 GTTGCTTCCTGATCAGCTCTTTATT NC_000001.8 82263 82287 +
x589_y475_chr1_82268 x589_y475 TTCCTGATCAGCTCTTTATTTGATT NC_000001.8 82268 82292 +
x1336_y611_chr1_82273 x1336_y611 GATCAGCTCTTTATTTGATTGAGAG NC_000001.8 82273 82297 +
x1498_y657_chr1_82278 x1498_y657 GCTCTTTATTTGATTGAGAGTGAGG NC_000001.8 82278 82302 +
x1418_y648_chr1_82283 x1418_y648 TTATTTGATTGAGAGTGAGGCAGGG NC_000001.8 82283 82307 +
x478_y273_chr1_82288 x478_y273 TGATTGAGAGTGAGGCAGGGAAGAT NC_000001.8 82288 82312 +
x1157_y611_chr1_82293 x1157_y611 GAGAGTGAGGCAGGGAAGATTAGAG NC_000001.8 82293 82317 +
x186_y1795_chr1_82298 x186_y1795 TGAGGCAGGGAAGATTAGAGGGAAG NC_000001.8 82298 82322 +
x777_y2067_chr1_82303 x777_y2067 CAGGGAAGATTAGAGGGAAGCTTAC NC_000001.8 82303 82327 +
x2324_y1919_chr1_82308 x2324_y1919 AAGATTAGAGGGAAGCTTACAGTGG NC_000001.8 82308 82332 +
x584_y719_chr1_82313 x584_y719 TAGAGGGAAGCTTACAGTGGAATTC NC_000001.8 82313 82337 +
x210_y1935_chr1_82318 x210_y1935 GGAAGCTTACAGTGGAATTCAGGGC NC_000001.8 82318 82342 +
x1018_y657_chr1_82323 x1018_y657 CTTACAGTGGAATTCAGGGCTGAGG NC_000001.8 82323 82347 +
x381_y359_chr1_82328 x381_y359 AGTGGAATTCAGGGCTGAGGCTGCT NC_000001.8 82328 82352 +
x650_y355_chr1_82333 x650_y355 AATTCAGGGCTGAGGCTGCTATTCT NC_000001.8 82333 82357 +
x1748_y715_chr1_82338 x1748_y715 AGGGCTGAGGCTGCTATTCTTTTGC NC_000001.8 82338 82362 +
x1474_y461_chr1_82343 x1474_y461 TGAGGCTGCTATTCTTTTGCTCCTT NC_000001.8 82343 82367 +
x1022_y795_chr1_82348 x1022_y795 CTGCTATTCTTTTGCTCCTTGTAAC NC_000001.8 82348 82372 +
x1130_y1383_chr1_82353 x1130_y1383 ATTCTTTTGCTCCTTGTAACTTCCT NC_000001.8 82353 82377 +

Total number of rows: 3055678

Table truncated, full table size 287310 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL5281.tpmap.bz2 44.8 Mb (ftp)(http) TPMAP

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