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Platform GPL5282 Query DataSets for GPL5282
Status Public on May 25, 2007
Title AFFY Human Phase3 v1.0 - C49
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol Affymetrix standard array manufacture protocol.
Please refer to http://www.affymetrix.com/technology/manufacturing/index.affx for details.
 
 
Web link http://transcriptome.affymetrix.com/publication/hs_whole_genome
Submission date May 23, 2007
Last update date Jul 18, 2007
Contact name Thomas R Gingeras
E-mail(s) tom_gingeras@affymetrix.com
Organization name Affymetrix, Inc.
Street address 3380 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (14) GSM191239, GSM191515, GSM191788, GSM192061, GSM192331, GSM192604 
Series (1)
GSE7576 RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription

Data table header descriptions
ID chip_coord_genomic_coord
CHIP_COORD chip coordinate
SEQUENCE probe sequence
RANGE_GB chromosome accession and version upon which probes are mapped
RANGE_START start position of mapped probe relative to RANGE_GB
RANGE_END end position of mapped probe relative to RANGE_GB
RANGE_STRAND chromosomal stand

Data table
ID CHIP_COORD SEQUENCE RANGE_GB RANGE_START RANGE_END RANGE_STRAND
x1661_y1663_chr1_139990 x1661_y1663 AAATCTCAAGTCAGACCAGTCCCTT NC_000001.8 139990 140014 +
x1661_y1663_chr1_725679 x1661_y1663 AAATCTCAAGTCAGACCAGTCCCTT NC_000001.8 725679 725703 +
x1800_y463_chr1_836280 x1800_y463 CACCAGCTGGTCTTGCCACTGACTT NC_000001.8 836280 836304 +
x1375_y735_chr1_836285 x1375_y735 GCTGGTCTTGCCACTGACTTCATTC NC_000001.8 836285 836309 +
x531_y445_chr1_836290 x531_y445 TCTTGCCACTGACTTCATTCCTGTT NC_000001.8 836290 836314 +
x2147_y1597_chr1_836295 x2147_y1597 CCACTGACTTCATTCCTGTTGTTTT NC_000001.8 836295 836319 +
x1301_y2039_chr1_836300 x1301_y2039 GACTTCATTCCTGTTGTTTTTCAAC NC_000001.8 836300 836324 +
x887_y2299_chr1_836305 x887_y2299 CATTCCTGTTGTTTTTCAACTTTTA NC_000001.8 836305 836329 +
x1436_y1437_chr1_836319 x1436_y1437 TTCAACTTTTACTTCCTCCTCCTCT NC_000001.8 836319 836343 +
x967_y2235_chr1_836324 x967_y2235 CTTTTACTTCCTCCTCCTCTTCAGA NC_000001.8 836324 836348 +
x1328_y1637_chr1_9939162 x1328_y1637 TCTAAGGTGGGCTAGAAAAATGGTT NC_000001.8 9939162 9939186 +
x845_y2427_chr1_9939167 x845_y2427 TCTTCTCTAAGGTGGGCTAGAAAAA NC_000001.8 9939167 9939191 +
x2262_y2151_chr1_9970039 x2262_y2151 AGACTTTCCCATGTATCAACTTCCA NC_000001.8 9970039 9970063 +
x656_y801_chr1_9970044 x656_y801 TCTGAAGACTTTCCCATGTATCAAC NC_000001.8 9970044 9970068 +
x2478_y465_chr1_9976633 x2478_y465 CTGCCCCACACAGCAGCTTGACCTT NC_000001.8 9976633 9976657 +
x171_y503_chr1_9976638 x171_y503 TAAATCTGCCCCACACAGCAGCTTG NC_000001.8 9976638 9976662 +
x406_y747_chr1_9976930 x406_y747 CAGAGCTGTACAAATTATGCTTTTC NC_000001.8 9976930 9976954 +
x87_y717_chr1_9976935 x87_y717 ACTCTCAGAGCTGTACAAATTATGC NC_000001.8 9976935 9976959 +
x1509_y241_chr1_9976940 x1509_y241 TCTTCACTCTCAGAGCTGTACAAAT NC_000001.8 9976940 9976964 +
x2331_y181_chr1_9976945 x2331_y181 TCCTGTCTTCACTCTCAGAGCTGTA NC_000001.8 9976945 9976969 +

Total number of rows: 3025867

Table truncated, full table size 287173 Kbytes.




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Supplementary file Size Download File type/resource
GPL5282.tpmap.bz2 44.0 Mb (ftp)(http) TPMAP

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