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Platform GPL5284 Query DataSets for GPL5284
Status Public on May 25, 2007
Title AFFY Human Phase3 v1.0 - C51
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol Affymetrix standard array manufacture protocol.
Please refer to http://www.affymetrix.com/technology/manufacturing/index.affx for details.
 
 
Web link http://transcriptome.affymetrix.com/publication/hs_whole_genome
Submission date May 23, 2007
Last update date Jul 18, 2007
Contact name Thomas R Gingeras
E-mail(s) tom_gingeras@affymetrix.com
Organization name Affymetrix, Inc.
Street address 3380 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (14) GSM191245, GSM191521, GSM191794, GSM192067, GSM192337, GSM192610 
Series (1)
GSE7576 RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription

Data table header descriptions
ID chip_coord_genomic_coord
CHIP_COORD chip coordinate
SEQUENCE probe sequence
RANGE_GB chromosome accession and version upon which probes are mapped
RANGE_START start position of mapped probe relative to RANGE_GB
RANGE_END end position of mapped probe relative to RANGE_GB
RANGE_STRAND chromosomal stand

Data table
ID CHIP_COORD SEQUENCE RANGE_GB RANGE_START RANGE_END RANGE_STRAND
x2500_y1295_chr1_166798 x2500_y1295 TCACAGCAAAATAGATTCCTAAAAA NC_000001.8 166798 166822 +
x1635_y349_chr1_166822 x1635_y349 AATCCCTGGCCTAAGATGACAGCCT NC_000001.8 166822 166846 +
x1574_y423_chr1_166827 x1574_y423 CTGGCCTAAGATGACAGCCTTGGCT NC_000001.8 166827 166851 +
x539_y1047_chr1_166857 x539_y1047 AGTTTGAATGTGCTGATAGTGGACA NC_000001.8 166857 166881 +
x376_y237_chr1_166862 x376_y237 GAATGTGCTGATAGTGGACATGGTA NC_000001.8 166862 166886 +
x1729_y75_chr1_166867 x1729_y75 TGCTGATAGTGGACATGGTAGAATG NC_000001.8 166867 166891 +
x1387_y427_chr1_166872 x1387_y427 ATAGTGGACATGGTAGAATGAAGGT NC_000001.8 166872 166896 +
x1360_y549_chr1_166877 x1360_y549 GGACATGGTAGAATGAAGGTGGTTG NC_000001.8 166877 166901 +
x824_y625_chr1_166882 x824_y625 TGGTAGAATGAAGGTGGTTGAAATG NC_000001.8 166882 166906 +
x1057_y331_chr1_166887 x1057_y331 GAATGAAGGTGGTTGAAATGTTCAT NC_000001.8 166887 166911 +
x1746_y2501_chr1_166892 x1746_y2501 AAGGTGGTTGAAATGTTCATATTAA NC_000001.8 166892 166916 +
x2193_y2101_chr1_166897 x2193_y2101 GGTTGAAATGTTCATATTAAAGAAC NC_000001.8 166897 166921 +
x1503_y1611_chr1_222374 x1503_y1611 TATAAATAATTAAACAAGGAAGTGT NC_000001.8 222374 222398 +
x704_y2283_chr1_222379 x704_y2283 CATGGTATAAATAATTAAACAAGGA NC_000001.8 222379 222403 +
x2299_y2113_chr1_222384 x2299_y2113 TAATTCATGGTATAAATAATTAAAC NC_000001.8 222384 222408 +
x2017_y1391_chr1_222389 x2017_y1391 ACTAGTAATTCATGGTATAAATAAT NC_000001.8 222389 222413 +
x541_y1307_chr1_222394 x541_y1307 CAATTACTAGTAATTCATGGTATAA NC_000001.8 222394 222418 +
x2023_y757_chr1_222399 x2023_y757 AGTGTCAATTACTAGTAATTCATGG NC_000001.8 222399 222423 +
x1214_y1211_chr1_222403 x1214_y1211 GAATTACTAGTAATTGACACTGTTA NC_000001.8 222403 222427 +
x1570_y1757_chr1_222404 x1570_y1757 TTAACAGTGTCAATTACTAGTAATT NC_000001.8 222404 222428 +

Total number of rows: 3878895

Table truncated, full table size 354796 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL5284.tpmap.bz2 49.0 Mb (ftp)(http) TPMAP

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