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Platform GPL5290 Query DataSets for GPL5290
Status Public on May 25, 2007
Title AFFY Human Phase3 v1.0 - C57
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol Affymetrix standard array manufacture protocol.
Please refer to http://www.affymetrix.com/technology/manufacturing/index.affx for details.
 
 
Web link http://transcriptome.affymetrix.com/publication/hs_whole_genome
Submission date May 23, 2007
Last update date Jul 18, 2007
Contact name Thomas R Gingeras
E-mail(s) tom_gingeras@affymetrix.com
Organization name Affymetrix, Inc.
Street address 3380 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (14) GSM191263, GSM191539, GSM191812, GSM192085, GSM192355, GSM192628 
Series (1)
GSE7576 RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription

Data table header descriptions
ID chip_coord_genomic_coord
CHIP_COORD chip coordinate
SEQUENCE probe sequence
RANGE_GB chromosome accession and version upon which probes are mapped
RANGE_START start position of mapped probe relative to RANGE_GB
RANGE_END end position of mapped probe relative to RANGE_GB
RANGE_STRAND chromosomal stand

Data table
ID CHIP_COORD SEQUENCE RANGE_GB RANGE_START RANGE_END RANGE_STRAND
x1834_y311_chr1_218315 x1834_y311 ATGTTAAAGCCAACAAGCACCAGAT NC_000001.8 218315 218339 +
x263_y937_chr1_218320 x263_y937 TGTGGATGTTAAAGCCAACAAGCAC NC_000001.8 218320 218344 +
x2190_y1325_chr1_218375 x2190_y1325 TGACCACTGAGTCGGCCGTGAAGAA NC_000001.8 218375 218399 +
x500_y2069_chr1_218428 x500_y2069 AAGCTTGTTTCTCCTGGGGGTGCTC NC_000001.8 218428 218452 +
x500_y2069_chr1_510957 x500_y2069 AAGCTTGTTTCTCCTGGGGGTGCTC NC_000001.8 510957 510981 +
x263_y937_chr1_511064 x263_y937 TGTGGATGTTAAAGCCAACAAGCAC NC_000001.8 511064 511088 +
x1834_y311_chr1_511069 x1834_y311 ATGTTAAAGCCAACAAGCACCAGAT NC_000001.8 511069 511093 +
x1114_y827_chr1_836285 x1114_y827 GCTGGTCTTGCCACTGACTTCATTC NC_000001.8 836285 836309 +
x2145_y827_chr1_836285 x2145_y827 GCTGGTCTTGCCACTGACTTCATTC NC_000001.8 836285 836309 +
x1170_y699_chr1_836286 x1170_y699 GGAATGAAGTCAGTGGCAAGACCAG NC_000001.8 836286 836310 +
x1245_y485_chr1_836290 x1245_y485 TCTTGCCACTGACTTCATTCCTGTT NC_000001.8 836290 836314 +
x1247_y485_chr1_836290 x1247_y485 TCTTGCCACTGACTTCATTCCTGTT NC_000001.8 836290 836314 +
x1306_y627_chr1_836291 x1306_y627 CAACAGGAATGAAGTCAGTGGCAAG NC_000001.8 836291 836315 +
x227_y1659_chr1_836295 x227_y1659 CCACTGACTTCATTCCTGTTGTTTT NC_000001.8 836295 836319 +
x415_y1659_chr1_836295 x415_y1659 CCACTGACTTCATTCCTGTTGTTTT NC_000001.8 836295 836319 +
x476_y1789_chr1_836296 x476_y1789 AAAAACAACAGGAATGAAGTCAGTG NC_000001.8 836296 836320 +
x965_y2097_chr1_836300 x965_y2097 GACTTCATTCCTGTTGTTTTTCAAC NC_000001.8 836300 836324 +
x620_y1589_chr1_836301 x620_y1589 AGTTGAAAAACAACAGGAATGAAGT NC_000001.8 836301 836325 +
x285_y1841_chr1_836302 x285_y1841 AAGTTGAAAAACAACAGGAATGAAG NC_000001.8 836302 836326 +
x2502_y2351_chr1_836305 x2502_y2351 CATTCCTGTTGTTTTTCAACTTTTA NC_000001.8 836305 836329 +

Total number of rows: 3943778

Table truncated, full table size 358473 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL5290.tpmap.bz2 52.7 Mb (ftp)(http) TPMAP

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