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Platform GPL5292 Query DataSets for GPL5292
Status Public on May 25, 2007
Title AFFY Human Phase3 v1.0 - C59
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol Affymetrix standard array manufacture protocol.
Please refer to http://www.affymetrix.com/technology/manufacturing/index.affx for details.
 
 
Web link http://transcriptome.affymetrix.com/publication/hs_whole_genome
Submission date May 23, 2007
Last update date Jul 18, 2007
Contact name Thomas R Gingeras
E-mail(s) tom_gingeras@affymetrix.com
Organization name Affymetrix, Inc.
Street address 3380 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (14) GSM191269, GSM191545, GSM191818, GSM192091, GSM192361, GSM192634 
Series (1)
GSE7576 RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription

Data table header descriptions
ID chip_coord_genomic_coord
CHIP_COORD chip coordinate
SEQUENCE probe sequence
RANGE_GB chromosome accession and version upon which probes are mapped
RANGE_START start position of mapped probe relative to RANGE_GB
RANGE_END end position of mapped probe relative to RANGE_GB
RANGE_STRAND chromosomal stand

Data table
ID CHIP_COORD SEQUENCE RANGE_GB RANGE_START RANGE_END RANGE_STRAND
x2050_y1375_chr1_983591 x2050_y1375 GTCCCATTCCCCAGTGGATTCAGAT NC_000001.8 983591 983615 +
x1141_y381_chr1_2311028 x1141_y381 GGAGGGCACTGGTCAGGCACAGGCT NC_000001.8 2311028 2311052 +
x1686_y1417_chr1_5844644 x1686_y1417 TAAGGAACAAGTGATTATGCTACCT NC_000001.8 5844644 5844668 +
x1130_y991_chr1_5844649 x1130_y991 AACAAGTGATTATGCTACCTTTGCA NC_000001.8 5844649 5844673 +
x552_y1867_chr1_8744737 x552_y1867 TCTTTTTCCGGCTGGAACCATGGAG NC_000001.8 8744737 8744761 +
x1529_y1543_chr1_8744742 x1529_y1543 TTCCGGCTGGAACCATGGAGGGTGT NC_000001.8 8744742 8744766 +
x19_y1237_chr1_8744784 x19_y1237 TTCCTGCTGTGCCAGAAACCCTTAA NC_000001.8 8744784 8744808 +
x1687_y2449_chr1_8744789 x1687_y2449 GCTGTGCCAGAAACCCTTAAGAAAA NC_000001.8 8744789 8744813 +
x1489_y1281_chr1_8744904 x1489_y1281 ATGAAAAAGCAAAGCACTATCACAA NC_000001.8 8744904 8744928 +
x1922_y231_chr1_8744909 x1922_y231 AAAGCAAAGCACTATCACAAGGAAT NC_000001.8 8744909 8744933 +
x280_y1923_chr1_8744914 x280_y1923 AAAGCACTATCACAAGGAATATAGG NC_000001.8 8744914 8744938 +
x1764_y287_chr1_8744919 x1764_y287 ACTATCACAAGGAATATAGGCAGAT NC_000001.8 8744919 8744943 +
x364_y141_chr1_8744924 x364_y141 CACAAGGAATATAGGCAGATGTACA NC_000001.8 8744924 8744948 +
x2151_y343_chr1_8744929 x2151_y343 GGAATATAGGCAGATGTACAGAACT NC_000001.8 8744929 8744953 +
x702_y247_chr1_8744934 x702_y247 ATAGGCAGATGTACAGAACTGAAAT NC_000001.8 8744934 8744958 +
x2452_y1257_chr1_8744939 x2452_y1257 CAGATGTACAGAACTGAAATTCGAA NC_000001.8 8744939 8744963 +
x1957_y343_chr1_8744969 x1957_y343 AGGATGGCAAGAAAAGCTGGCAACT NC_000001.8 8744969 8744993 +
x179_y1405_chr1_8745069 x179_y1405 GAAAGGTGTTGCAGCTTCTTCGCCT NC_000001.8 8745069 8745093 +
x2437_y1803_chr1_8745109 x2437_y1803 TGGAACCTTTGTGAAGCTCAACAAG NC_000001.8 8745109 8745133 +
x820_y1993_chr1_8745114 x820_y1993 CCTTTGTGAAGCTCAACAAGGCTTC NC_000001.8 8745114 8745138 +

Total number of rows: 2953897

Table truncated, full table size 272274 Kbytes.




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Supplementary file Size Download File type/resource
GPL5292.tpmap.bz2 43.0 Mb (ftp)(http) TPMAP

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