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Platform GPL5298 Query DataSets for GPL5298
Status Public on May 25, 2007
Title AFFY Human Phase3 v1.0 - C65
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol Affymetrix standard array manufacture protocol.
Please refer to http://www.affymetrix.com/technology/manufacturing/index.affx for details.
 
 
Web link http://transcriptome.affymetrix.com/publication/hs_whole_genome
Submission date May 23, 2007
Last update date Jul 18, 2007
Contact name Thomas R Gingeras
E-mail(s) tom_gingeras@affymetrix.com
Organization name Affymetrix, Inc.
Street address 3380 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (14) GSM191287, GSM191563, GSM191836, GSM192109, GSM192379, GSM192652 
Series (1)
GSE7576 RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription

Data table header descriptions
ID chip_coord_genomic_coord
CHIP_COORD chip coordinate
SEQUENCE probe sequence
RANGE_GB chromosome accession and version upon which probes are mapped
RANGE_START start position of mapped probe relative to RANGE_GB
RANGE_END end position of mapped probe relative to RANGE_GB
RANGE_STRAND chromosomal stand

Data table
ID CHIP_COORD SEQUENCE RANGE_GB RANGE_START RANGE_END RANGE_STRAND
x1199_y343_chr1_132685 x1199_y343 GACTTGGCTTCAATGTCACCTTAAC NC_000001.8 132685 132709 +
x1024_y2206_chr1_132690 x1024_y2206 GGCTTCAATGTCACCTTAACTGGAA NC_000001.8 132690 132714 +
x344_y317_chr1_132695 x344_y317 CAATGTCACCTTAACTGGAAGCTTC NC_000001.8 132695 132719 +
x1425_y777_chr1_132803 x1425_y777 TTTGTACCTGAATAACATGTTGCCC NC_000001.8 132803 132827 +
x2242_y417_chr1_132808 x2242_y417 ACCTGAATAACATGTTGCCCAGTCA NC_000001.8 132808 132832 +
x2386_y89_chr1_145206 x2386_y89 TTATTGTGATCATGATACTATCTGA NC_000001.8 145206 145230 +
x893_y37_chr1_145211 x893_y37 GTGATCATGATACTATCTGACAAGG NC_000001.8 145211 145235 +
x1224_y153_chr1_145216 x1224_y153 CATGATACTATCTGACAAGGGCAGT NC_000001.8 145216 145240 +
x1467_y45_chr1_145221 x1467_y45 TACTATCTGACAAGGGCAGTGATGC NC_000001.8 145221 145245 +
x1753_y5_chr1_145226 x1753_y5 TCTGACAAGGGCAGTGATGCATGAT NC_000001.8 145226 145250 +
x1320_y7_chr1_145231 x1320_y7 CAAGGGCAGTGATGCATGATAACAT NC_000001.8 145231 145255 +
x2316_y95_chr1_145236 x2316_y95 GCAGTGATGCATGATAACATCAAAA NC_000001.8 145236 145260 +
x1773_y459_chr1_145241 x1773_y459 GATGCATGATAACATCAAAAAATTA NC_000001.8 145241 145265 +
x2033_y759_chr1_145246 x2033_y759 ATGATAACATCAAAAAATTAGAAAC NC_000001.8 145246 145270 +
x1037_y1616_chr1_145251 x1037_y1616 AACATCAAAAAATTAGAAACTGTAA NC_000001.8 145251 145275 +
x614_y699_chr1_145256 x614_y699 CAAAAAATTAGAAACTGTAATGAGG NC_000001.8 145256 145280 +
x2011_y593_chr1_145262 x2011_y593 ATTAGAAACTGTAATGAGGTCTCTT NC_000001.8 145262 145286 +
x2384_y427_chr1_145267 x2384_y427 AAACTGTAATGAGGTCTCTTGGGCA NC_000001.8 145267 145291 +
x1209_y603_chr1_145272 x1209_y603 GTAATGAGGTCTCTTGGGCAAAATT NC_000001.8 145272 145296 +
x1594_y469_chr1_145277 x1594_y469 GAGGTCTCTTGGGCAAAATTCCATA NC_000001.8 145277 145301 +

Total number of rows: 1363487

Table truncated, full table size 126031 Kbytes.




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Supplementary file Size Download File type/resource
GPL5298.tpmap.bz2 16.7 Mb (ftp)(http) TPMAP

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