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Platform GPL5302 Query DataSets for GPL5302
Status Public on May 25, 2007
Title AFFY Human Phase3 v1.0 - C69
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol Affymetrix standard array manufacture protocol.
Please refer to http://www.affymetrix.com/technology/manufacturing/index.affx for details.
 
 
Web link http://transcriptome.affymetrix.com/publication/hs_whole_genome
Submission date May 23, 2007
Last update date Jul 30, 2007
Contact name Thomas R Gingeras
E-mail(s) tom_gingeras@affymetrix.com
Organization name Affymetrix, Inc.
Street address 3380 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (14) GSM191299, GSM191575, GSM191848, GSM192121, GSM192391, GSM192664 
Series (1)
GSE7576 RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription

Data table header descriptions
ID chip_coord_genomic_coord
CHIP_COORD chip coordinate
SEQUENCE probe sequence
RANGE_GB chromosome accession and version upon which probes are mapped
RANGE_START start position of mapped probe relative to RANGE_GB
RANGE_END end position of mapped probe relative to RANGE_GB
RANGE_STRAND chromosomal stand

Data table
ID CHIP_COORD SEQUENCE RANGE_GB RANGE_START RANGE_END RANGE_STRAND
x182_y427_chr1_218287 x182_y427 GTCATAGAGCTTCTTCACAGCCTGT NC_000001.8 218287 218311 +
x277_y1563_chr1_218548 x277_y1563 CCAAGAAGGCAGTGTTGAAAGGTGT NC_000001.8 218548 218572 +
x405_y2407_chr1_218553 x405_y2407 AAAGGCCAAGAAGGCAGTGTTGAAA NC_000001.8 218553 218577 +
x1678_y1819_chr1_510802 x1678_y1819 TCCTAAAGCCGAAGCCAAAGTGAAG NC_000001.8 510802 510826 +
x405_y2407_chr1_510832 x405_y2407 AAAGGCCAAGAAGGCAGTGTTGAAA NC_000001.8 510832 510856 +
x277_y1563_chr1_510837 x277_y1563 CCAAGAAGGCAGTGTTGAAAGGTGT NC_000001.8 510837 510861 +
x182_y427_chr1_511097 x182_y427 GTCATAGAGCTTCTTCACAGCCTGT NC_000001.8 511097 511121 +
x249_y209_chr1_1840919 x249_y209 GTGTGTGTGTGTATATATATATATA NC_000001.8 1840919 1840943 +
x1151_y763_chr1_4145993 x1151_y763 ATCACCAAGTTTGAGGAGCATGTGC NC_000001.8 4145993 4146017 +
x641_y1024_chr1_4145998 x641_y1024 AGGAGATCACCAAGTTTGAGGAGCA NC_000001.8 4145998 4146022 +
x835_y1610_chr1_8887873 x835_y1610 GTGGTTCGTCCTTCACCTTGGCTTT NC_000001.8 8887873 8887897 +
x2152_y523_chr1_8887878 x2152_y523 TCTCTGTGGTTCGTCCTTCACCTTG NC_000001.8 8887878 8887902 +
x728_y905_chr1_8888086 x728_y905 CACTTCACTTGGCCTCTCCAGCACC NC_000001.8 8888086 8888110 +
x540_y135_chr1_8888091 x540_y135 GCACACACTTCACTTGGCCTCTCCA NC_000001.8 8888091 8888115 +
x2478_y323_chr1_8888096 x2478_y323 AAAATGCACACACTTCACTTGGCCT NC_000001.8 8888096 8888120 +
x2464_y487_chr1_8888101 x2464_y487 TATCAAAAATGCACACACTTCACTT NC_000001.8 8888101 8888125 +
x956_y489_chr1_8888106 x956_y489 ACAGTTATCAAAAATGCACACACTT NC_000001.8 8888106 8888130 +
x643_y959_chr1_8888111 x643_y959 AGTACACAGTTATCAAAAATGCACA NC_000001.8 8888111 8888135 +
x839_y1393_chr1_8888172 x839_y1393 ATTCTGCATTTTTATAAAACTTGAT NC_000001.8 8888172 8888196 +
x1894_y1381_chr1_8888182 x1894_y1381 GTAAAACAAAATTCTGCATTTTTAT NC_000001.8 8888182 8888206 +

Total number of rows: 2893529

Table truncated, full table size 274697 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL5302.tpmap.bz2 42.6 Mb (ftp)(http) TPMAP

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