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Platform GPL5305 Query DataSets for GPL5305
Status Public on May 25, 2007
Title AFFY Human Phase3 v1.0 - C72
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol Affymetrix standard array manufacture protocol.
Please refer to http://www.affymetrix.com/technology/manufacturing/index.affx for details.
 
 
Web link http://transcriptome.affymetrix.com/publication/hs_whole_genome
Submission date May 23, 2007
Last update date Jul 30, 2007
Contact name Thomas R Gingeras
E-mail(s) tom_gingeras@affymetrix.com
Organization name Affymetrix, Inc.
Street address 3380 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (14) GSM191308, GSM191584, GSM191857, GSM192130, GSM192400, GSM192673 
Series (1)
GSE7576 RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription

Data table header descriptions
ID chip_coord_genomic_coord
CHIP_COORD chip coordinate
SEQUENCE probe sequence
RANGE_GB chromosome accession and version upon which probes are mapped
RANGE_START start position of mapped probe relative to RANGE_GB
RANGE_END end position of mapped probe relative to RANGE_GB
RANGE_STRAND chromosomal stand

Data table
ID CHIP_COORD SEQUENCE RANGE_GB RANGE_START RANGE_END RANGE_STRAND
x2263_y1327_chr1_116893 x2263_y1327 TTTCCATGCTACATAAATCTGAAAA NC_000001.8 116893 116917 +
x1983_y1267_chr1_116898 x1983_y1267 ATGCTACATAAATCTGAAAACTCTA NC_000001.8 116898 116922 +
x1823_y1111_chr1_116903 x1823_y1111 ACATAAATCTGAAAACTCTATTTCA NC_000001.8 116903 116927 +
x636_y2477_chr1_116908 x636_y2477 AATCTGAAAACTCTATTTCACATAA NC_000001.8 116908 116932 +
x1666_y1819_chr1_116913 x1666_y1819 GAAAACTCTATTTCACATAAAACTG NC_000001.8 116913 116937 +
x2351_y1569_chr1_116918 x2351_y1569 CTCTATTTCACATAAAACTGGAGCT NC_000001.8 116918 116942 +
x1819_y667_chr1_116923 x1819_y667 TTTCACATAAAACTGGAGCTGAAAG NC_000001.8 116923 116947 +
x2380_y2423_chr1_117053 x2380_y2423 TTTCATGTTTTACAGCTCTGGGAAA NC_000001.8 117053 117077 +
x1255_y2309_chr1_117058 x1255_y2309 TGTTTTACAGCTCTGGGAAAATAGA NC_000001.8 117058 117082 +
x1605_y1295_chr1_117063 x1605_y1295 TACAGCTCTGGGAAAATAGAAAATA NC_000001.8 117063 117087 +
x106_y1841_chr1_117068 x106_y1841 CTCTGGGAAAATAGAAAATAAAATG NC_000001.8 117068 117092 +
x459_y1815_chr1_117073 x459_y1815 GGAAAATAGAAAATAAAATGTTCTG NC_000001.8 117073 117097 +
x2094_y2017_chr1_117078 x2094_y2017 ATAGAAAATAAAATGTTCTGTTAGC NC_000001.8 117078 117102 +
x1588_y2281_chr1_117113 x1588_y2281 CTGTGCCCCCAAAAAACCCTATGGA NC_000001.8 117113 117137 +
x1442_y2271_chr1_117118 x1442_y2271 CCCCCAAAAAACCCTATGGATTGCA NC_000001.8 117118 117142 +
x2499_y1743_chr1_117123 x2499_y1743 AAAAAACCCTATGGATTGCATCATT NC_000001.8 117123 117147 +
x1778_y951_chr1_117128 x1778_y951 ACCCTATGGATTGCATCATTATTAC NC_000001.8 117128 117152 +
x1981_y1321_chr1_117133 x1981_y1321 ATGGATTGCATCATTATTACCTAAA NC_000001.8 117133 117157 +
x1019_y883_chr1_117138 x1019_y883 TTGCATCATTATTACCTAAAAAGTC NC_000001.8 117138 117162 +
x32_y2037_chr1_117143 x32_y2037 TCATTATTACCTAAAAAGTCTATTC NC_000001.8 117143 117167 +

Total number of rows: 3160465

Table truncated, full table size 293955 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL5305.tpmap.bz2 46.0 Mb (ftp)(http) TPMAP

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