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Platform GPL5310 Query DataSets for GPL5310
Status Public on May 25, 2007
Title AFFY Human Phase3 v1.0 - C77
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol Affymetrix standard array manufacture protocol.
Please refer to http://www.affymetrix.com/technology/manufacturing/index.affx for details.
 
 
Web link http://transcriptome.affymetrix.com/publication/hs_whole_genome
Submission date May 23, 2007
Last update date Jul 30, 2007
Contact name Thomas R Gingeras
E-mail(s) tom_gingeras@affymetrix.com
Organization name Affymetrix, Inc.
Street address 3380 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (14) GSM191323, GSM191599, GSM191872, GSM192145, GSM192415, GSM192688 
Series (1)
GSE7576 RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription

Data table header descriptions
ID chip_coord_genomic_coord
CHIP_COORD chip coordinate
SEQUENCE probe sequence
RANGE_GB chromosome accession and version upon which probes are mapped
RANGE_START start position of mapped probe relative to RANGE_GB
RANGE_END end position of mapped probe relative to RANGE_GB
RANGE_STRAND chromosomal stand

Data table
ID CHIP_COORD SEQUENCE RANGE_GB RANGE_START RANGE_END RANGE_STRAND
x1879_y2535_chr1_605537 x1879_y2535 CTCAACTTAAACTCCAGCACCACAA NC_000001.8 605537 605561 +
x1725_y733_chr1_605567 x1725_y733 CTACTATCTCGCACCTGAAACAAGC NC_000001.8 605567 605591 +
x1009_y949_chr1_605572 x1009_y949 ATCTCGCACCTGAAACAAGCTAACA NC_000001.8 605572 605596 +
x1970_y1839_chr1_605612 x1970_y1839 ATTCCATCCACCCTCCTCTCCCTAG NC_000001.8 605612 605636 +
x816_y1941_chr1_605617 x816_y1941 ATCCACCCTCCTCTCCCTAGGAGGC NC_000001.8 605617 605641 +
x1132_y11_chr1_1840920 x1132_y11 TGTGTGTGTGTGTATATATATATAT NC_000001.8 1840920 1840944 +
x2403_y31_chr1_5001027 x2403_y31 TATCTATCTAGCTAGCTAGCTAGCT NC_000001.8 5001027 5001051 +
x1221_y1193_chr1_6542916 x1221_y1193 GAAGGCACAAGCACAGAGTCAGAAA NC_000001.8 6542916 6542940 +
x1592_y207_chr1_6542921 x1592_y207 CACAAGCACAGAGTCAGAAAGCTAA NC_000001.8 6542921 6542945 +
x395_y497_chr1_8745250 x395_y497 TGCTTTGACAGATAACGCTTTGATT NC_000001.8 8745250 8745274 +
x826_y665_chr1_8780552 x826_y665 AGATGCTGGCAACAGGGAGGACCAG NC_000001.8 8780552 8780576 +
x2199_y685_chr1_8780557 x2199_y685 GGTGGAGATGCTGGCAACAGGGAGG NC_000001.8 8780557 8780581 +
x1420_y659_chr1_8780562 x1420_y659 TAGAAGGTGGAGATGCTGGCAACAG NC_000001.8 8780562 8780586 +
x2426_y709_chr1_8780567 x2426_y709 TTTTGTAGAAGGTGGAGATGCTGGC NC_000001.8 8780567 8780591 +
x629_y1787_chr1_8780572 x629_y1787 ACCCATTTTGTAGAAGGTGGAGATG NC_000001.8 8780572 8780596 +
x395_y497_chr1_8780742 x395_y497 TGCTTTGACAGATAACGCTTTGATT NC_000001.8 8780742 8780766 +
x228_y995_chr1_8887920 x228_y995 TGGCTTTGGAGGAGCAGGTTTAGCA NC_000001.8 8887920 8887944 +
x1738_y467_chr1_8887925 x1738_y467 GGCTCTGGCTTTGGAGGAGCAGGTT NC_000001.8 8887925 8887949 +
x649_y723_chr1_8887930 x649_y723 GCTTGGGCTCTGGCTTTGGAGGAGC NC_000001.8 8887930 8887954 +
x30_y2209_chr1_8887935 x30_y2209 TTTAGGCTTGGGCTCTGGCTTTGGA NC_000001.8 8887935 8887959 +

Total number of rows: 2978359

Table truncated, full table size 277028 Kbytes.




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Supplementary file Size Download File type/resource
GPL5310.tpmap.bz2 43.6 Mb (ftp)(http) TPMAP

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