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Platform GPL5312 Query DataSets for GPL5312
Status Public on May 25, 2007
Title AFFY Human Phase3 v1.0 - C79
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol Affymetrix standard array manufacture protocol.
Please refer to http://www.affymetrix.com/technology/manufacturing/index.affx for details.
 
 
Web link http://transcriptome.affymetrix.com/publication/hs_whole_genome
Submission date May 23, 2007
Last update date Jul 30, 2007
Contact name Thomas R Gingeras
E-mail(s) tom_gingeras@affymetrix.com
Organization name Affymetrix, Inc.
Street address 3380 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (14) GSM191329, GSM191605, GSM191878, GSM192151, GSM192421, GSM192694 
Series (1)
GSE7576 RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription

Data table header descriptions
ID chip_coord_genomic_coord
CHIP_COORD chip coordinate
SEQUENCE probe sequence
RANGE_GB chromosome accession and version upon which probes are mapped
RANGE_START start position of mapped probe relative to RANGE_GB
RANGE_END end position of mapped probe relative to RANGE_GB
RANGE_STRAND chromosomal stand

Data table
ID CHIP_COORD SEQUENCE RANGE_GB RANGE_START RANGE_END RANGE_STRAND
x2433_y723_chr1_59094 x2433_y723 CAGGAAGTACATGGGAGAGTGAAGG NC_000001.8 59094 59118 +
x1725_y1873_chr1_218584 x1725_y1873 TTCGCTTTGGCTTCGGCTTTAGGAG NC_000001.8 218584 218608 +
x1925_y783_chr1_606000 x1925_y783 TAAGGACTGCAAAACCCCACTCTGC NC_000001.8 606000 606024 +
x530_y1327_chr1_606005 x530_y1327 ACTGCAAAACCCCACTCTGCATCAA NC_000001.8 606005 606029 +
x2118_y2501_chr1_606010 x2118_y2501 AAAACCCCACTCTGCATCAACTGAA NC_000001.8 606010 606034 +
x2259_y1319_chr1_606015 x2259_y1319 CCCACTCTGCATCAACTGAACGCAA NC_000001.8 606015 606039 +
x325_y81_chr1_606020 x325_y81 TCTGCATCAACTGAACGCAAATCAG NC_000001.8 606020 606044 +
x919_y345_chr1_606025 x919_y345 ATCAACTGAACGCAAATCAGCCACT NC_000001.8 606025 606049 +
x1952_y1353_chr1_606030 x1952_y1353 CTGAACGCAAATCAGCCACTTTAAT NC_000001.8 606030 606054 +
x1765_y1987_chr1_606035 x1765_y1987 CGCAAATCAGCCACTTTAATTAAGC NC_000001.8 606035 606059 +
x1209_y773_chr1_606040 x1209_y773 ATCAGCCACTTTAATTAAGCTAAGC NC_000001.8 606040 606064 +
x872_y2313_chr1_606045 x872_y2313 CCACTTTAATTAAGCTAAGCCCTTA NC_000001.8 606045 606069 +
x1445_y2275_chr1_606050 x1445_y2275 TTAATTAAGCTAAGCCCTTACTAGA NC_000001.8 606050 606074 +
x203_y1597_chr1_606185 x203_y1597 GGTTTGAAGCTGCTTCTTCGAATTT NC_000001.8 606185 606209 +
x138_y245_chr1_606190 x138_y245 GAAGCTGCTTCTTCGAATTTGCAAT NC_000001.8 606190 606214 +
x619_y245_chr1_606195 x619_y245 TGCTTCTTCGAATTTGCAATTCAAT NC_000001.8 606195 606219 +
x120_y1303_chr1_606200 x120_y1303 CTTCGAATTTGCAATTCAATATGAA NC_000001.8 606200 606224 +
x1967_y1023_chr1_606205 x1967_y1023 AATTTGCAATTCAATATGAAAATCA NC_000001.8 606205 606229 +
x840_y1030_chr1_606210 x840_y1030 GCAATTCAATATGAAAATCACCTCA NC_000001.8 606210 606234 +
x740_y397_chr1_606215 x740_y397 TCAATATGAAAATCACCTCAGAGCT NC_000001.8 606215 606239 +

Total number of rows: 3649568

Table truncated, full table size 342283 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL5312.tpmap.bz2 47.2 Mb (ftp)(http) TPMAP

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