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Platform GPL5313 Query DataSets for GPL5313
Status Public on May 25, 2007
Title AFFY Human Phase3 v1.0 - C80
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol Affymetrix standard array manufacture protocol.
Please refer to http://www.affymetrix.com/technology/manufacturing/index.affx for details.
 
 
Web link http://transcriptome.affymetrix.com/publication/hs_whole_genome
Submission date May 23, 2007
Last update date Jul 30, 2007
Contact name Thomas R Gingeras
E-mail(s) tom_gingeras@affymetrix.com
Organization name Affymetrix, Inc.
Street address 3380 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (14) GSM191332, GSM191608, GSM191881, GSM192154, GSM192424, GSM192697 
Series (1)
GSE7576 RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription

Data table header descriptions
ID chip_coord_genomic_coord
CHIP_COORD chip coordinate
SEQUENCE probe sequence
RANGE_GB chromosome accession and version upon which probes are mapped
RANGE_START start position of mapped probe relative to RANGE_GB
RANGE_END end position of mapped probe relative to RANGE_GB
RANGE_STRAND chromosomal stand

Data table
ID CHIP_COORD SEQUENCE RANGE_GB RANGE_START RANGE_END RANGE_STRAND
x1572_y21_chr1_5222398 x1572_y21 TAATAATAATAATCATCATCATCAT NC_000001.8 5222398 5222422 +
x116_y1915_chr1_6180949 x116_y1915 TATGAGTTCTTGAATAAAACTTGGG NC_000001.8 6180949 6180973 +
x898_y2095_chr1_6180954 x898_y2095 TTTTGTATGAGTTCTTGAATAAAAC NC_000001.8 6180954 6180978 +
x1870_y1375_chr1_6181051 x1870_y1375 GCTAACAGCAAAGAGAGTTACGAAT NC_000001.8 6181051 6181075 +
x2359_y1967_chr1_6187317 x2359_y1967 GCTGGGAACCTTGGTGGAGGGGTGG NC_000001.8 6187317 6187341 +
x2337_y1941_chr1_6187322 x2337_y1941 GAAAAGCTGGGAACCTTGGTGGAGG NC_000001.8 6187322 6187346 +
x2068_y1323_chr1_6187349 x2068_y1323 TTTTGCAAGAAAGGATCAAAGTGAA NC_000001.8 6187349 6187373 +
x673_y1273_chr1_6187354 x673_y1273 GCAGTTTTTGCAAGAAAGGATCAAA NC_000001.8 6187354 6187378 +
x1288_y9_chr1_6191981 x1288_y9 AGATGGAATCATGGATGCTGCCAAT NC_000001.8 6191981 6192005 +
x1838_y57_chr1_6191986 x1838_y57 GTAGAAGATGGAATCATGGATGCTG NC_000001.8 6191986 6192010 +
x1434_y1111_chr1_6191991 x1434_y1111 ACCCTGTAGAAGATGGAATCATGGA NC_000001.8 6191991 6192015 +
x14_y895_chr1_6191996 x14_y895 CACCCACCCTGTAGAAGATGGAATC NC_000001.8 6191996 6192020 +
x410_y607_chr1_6192001 x410_y607 GATTGCACCCACCCTGTAGAAGATG NC_000001.8 6192001 6192025 +
x2417_y1145_chr1_6192006 x2417_y1145 CTCTTGATTGCACCCACCCTGTAGA NC_000001.8 6192006 6192030 +
x1871_y349_chr1_6192011 x1871_y349 GTTCACTCTTGATTGCACCCACCCT NC_000001.8 6192011 6192035 +
x1822_y959_chr1_6192016 x1822_y959 CTGAAGTTCACTCTTGATTGCACCC NC_000001.8 6192016 6192040 +
x187_y1715_chr1_8051580 x187_y1715 TGGCAAGTTCTTTAGCCTTTGCCTT NC_000001.8 8051580 8051604 +
x808_y1023_chr1_8051690 x808_y1023 TAATTGGTCCTGATAGCTTCCACCA NC_000001.8 8051690 8051714 +
x448_y1189_chr1_8051690 x448_y1189 TGGTGGAAGCTATCAGGACCAATTA NC_000001.8 8051690 8051714 +
x1290_y1201_chr1_8051695 x1290_y1201 GGTCCTGATAGCTTCCACCAGCTTA NC_000001.8 8051695 8051719 +

Total number of rows: 2908801

Table truncated, full table size 270563 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL5313.tpmap.bz2 42.8 Mb (ftp)(http) TPMAP

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