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Platform GPL5314 Query DataSets for GPL5314
Status Public on May 25, 2007
Title AFFY Human Phase3 v1.0 - C81
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol Affymetrix standard array manufacture protocol.
Please refer to http://www.affymetrix.com/technology/manufacturing/index.affx for details.
 
 
Web link http://transcriptome.affymetrix.com/publication/hs_whole_genome
Submission date May 23, 2007
Last update date Jul 30, 2007
Contact name Thomas R Gingeras
E-mail(s) tom_gingeras@affymetrix.com
Organization name Affymetrix, Inc.
Street address 3380 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (14) GSM191335, GSM191611, GSM191884, GSM192157, GSM192427, GSM192700 
Series (1)
GSE7576 RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription

Data table header descriptions
ID chip_coord_genomic_coord
CHIP_COORD chip coordinate
SEQUENCE probe sequence
RANGE_GB chromosome accession and version upon which probes are mapped
RANGE_START start position of mapped probe relative to RANGE_GB
RANGE_END end position of mapped probe relative to RANGE_GB
RANGE_STRAND chromosomal stand

Data table
ID CHIP_COORD SEQUENCE RANGE_GB RANGE_START RANGE_END RANGE_STRAND
x1790_y939_chr1_8256 x1790_y939 GGGGAGCAGCCCAGCCTCTGTGATC NC_000001.8 8256 8280 +
x888_y1797_chr1_8261 x888_y1797 AGGGTGGGGAGCAGCCCAGCCTCTG NC_000001.8 8261 8285 +
x462_y113_chr1_8266 x462_y113 TGCAGAGGGTGGGGAGCAGCCCAGC NC_000001.8 8266 8290 +
x2016_y834_chr1_8271 x2016_y834 AGGTGTGCAGAGGGTGGGGAGCAGC NC_000001.8 8271 8295 +
x2550_y1195_chr1_8276 x2550_y1195 GCAGGAGGTGTGCAGAGGGTGGGGA NC_000001.8 8276 8300 +
x2347_y433_chr1_8281 x2347_y433 TAGAAGCAGGAGGTGTGCAGAGGGT NC_000001.8 8281 8305 +
x6_y697_chr1_8286 x6_y697 GCTGTTAGAAGCAGGAGGTGTGCAG NC_000001.8 8286 8310 +
x1395_y573_chr1_8291 x1395_y573 GCTCTGCTGTTAGAAGCAGGAGGTG NC_000001.8 8291 8315 +
x2081_y99_chr1_8296 x2081_y99 TGGCAGCTCTGCTGTTAGAAGCAGG NC_000001.8 8296 8320 +
x1399_y263_chr1_8301 x1399_y263 TGGCCTGGCAGCTCTGCTGTTAGAA NC_000001.8 8301 8325 +
x19_y43_chr1_8306 x19_y43 GGGCCTGGCCTGGCAGCTCTGCTGT NC_000001.8 8306 8330 +
x1608_y389_chr1_8311 x1608_y389 CCTGAGGGCCTGGCCTGGCAGCTCT NC_000001.8 8311 8335 +
x1349_y1175_chr1_8316 x1349_y1175 CCTTGCCTGAGGGCCTGGCCTGGCA NC_000001.8 8316 8340 +
x2366_y2251_chr1_8321 x2366_y2251 AGAGCCCTTGCCTGAGGGCCTGGCC NC_000001.8 8321 8345 +
x1797_y1069_chr1_8326 x1797_y1069 ACTTCAGAGCCCTTGCCTGAGGGCC NC_000001.8 8326 8350 +
x287_y1243_chr1_8331 x287_y1243 CCCTGACTTCAGAGCCCTTGCCTGA NC_000001.8 8331 8355 +
x1115_y541_chr1_8336 x1115_y541 GGTGACCCTGACTTCAGAGCCCTTG NC_000001.8 8336 8360 +
x2520_y837_chr1_8341 x2520_y837 AAGTAGGTGACCCTGACTTCAGAGC NC_000001.8 8341 8365 +
x2035_y2057_chr1_8346 x2035_y2057 CTGGCAAGTAGGTGACCCTGACTTC NC_000001.8 8346 8370 +
x1136_y1805_chr1_8351 x1136_y1805 CGGCCCTGGCAAGTAGGTGACCCTG NC_000001.8 8351 8375 +

Total number of rows: 3390098

Table truncated, full table size 315533 Kbytes.




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Supplementary file Size Download File type/resource
GPL5314.tpmap.bz2 46.1 Mb (ftp)(http) TPMAP

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