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Platform GPL5324 Query DataSets for GPL5324
Status Public on May 25, 2007
Title AFFY Human Phase3 v1.0 - C91
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol Affymetrix standard array manufacture protocol.
Please refer to http://www.affymetrix.com/technology/manufacturing/index.affx for details.
 
 
Web link http://transcriptome.affymetrix.com/publication/hs_whole_genome
Submission date May 23, 2007
Last update date Jul 30, 2007
Contact name Thomas R Gingeras
E-mail(s) tom_gingeras@affymetrix.com
Organization name Affymetrix, Inc.
Street address 3380 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (14) GSM191365, GSM191641, GSM191914, GSM192187, GSM192457, GSM192730 
Series (1)
GSE7576 RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription

Data table header descriptions
ID chip_coord_genomic_coord
CHIP_COORD chip coordinate
SEQUENCE probe sequence
RANGE_GB chromosome accession and version upon which probes are mapped
RANGE_START start position of mapped probe relative to RANGE_GB
RANGE_END end position of mapped probe relative to RANGE_GB
RANGE_STRAND chromosomal stand

Data table
ID CHIP_COORD SEQUENCE RANGE_GB RANGE_START RANGE_END RANGE_STRAND
x2058_y13_chr1_82258 x2058_y13 GCATAGTTGCTTCCTGATCAGCTCT NC_000001.8 82258 82282 +
x965_y31_chr1_82259 x965_y31 AAGAGCTGATCAGGAAGCAACTATG NC_000001.8 82259 82283 +
x1319_y229_chr1_82263 x1319_y229 GTTGCTTCCTGATCAGCTCTTTATT NC_000001.8 82263 82287 +
x1846_y573_chr1_82264 x1846_y573 AAATAAAGAGCTGATCAGGAAGCAA NC_000001.8 82264 82288 +
x398_y229_chr1_82268 x398_y229 TTCCTGATCAGCTCTTTATTTGATT NC_000001.8 82268 82292 +
x1530_y473_chr1_82269 x1530_y473 CAATCAAATAAAGAGCTGATCAGGA NC_000001.8 82269 82293 +
x1581_y291_chr1_82273 x1581_y291 GATCAGCTCTTTATTTGATTGAGAG NC_000001.8 82273 82297 +
x2534_y131_chr1_82274 x2534_y131 ACTCTCAATCAAATAAAGAGCTGAT NC_000001.8 82274 82298 +
x1150_y317_chr1_82278 x1150_y317 GCTCTTTATTTGATTGAGAGTGAGG NC_000001.8 82278 82302 +
x486_y291_chr1_82279 x486_y291 GCCTCACTCTCAATCAAATAAAGAG NC_000001.8 82279 82303 +
x1488_y311_chr1_82283 x1488_y311 TTATTTGATTGAGAGTGAGGCAGGG NC_000001.8 82283 82307 +
x582_y533_chr1_82284 x582_y533 TCCCTGCCTCACTCTCAATCAAATA NC_000001.8 82284 82308 +
x2208_y133_chr1_82288 x2208_y133 TGATTGAGAGTGAGGCAGGGAAGAT NC_000001.8 82288 82312 +
x803_y379_chr1_82289 x803_y379 AATCTTCCCTGCCTCACTCTCAATC NC_000001.8 82289 82313 +
x1215_y291_chr1_82293 x1215_y291 GAGAGTGAGGCAGGGAAGATTAGAG NC_000001.8 82293 82317 +
x1055_y165_chr1_82294 x1055_y165 CCTCTAATCTTCCCTGCCTCACTCT NC_000001.8 82294 82318 +
x382_y317_chr1_82323 x382_y317 CTTACAGTGGAATTCAGGGCTGAGG NC_000001.8 82323 82347 +
x1680_y513_chr1_82325 x1680_y513 AGCCTCAGCCCTGAATTCCACTGTA NC_000001.8 82325 82349 +
x1554_y173_chr1_82328 x1554_y173 AGTGGAATTCAGGGCTGAGGCTGCT NC_000001.8 82328 82352 +
x1596_y427_chr1_82330 x1596_y427 ATAGCAGCCTCAGCCCTGAATTCCA NC_000001.8 82330 82354 +

Total number of rows: 2986089

Table truncated, full table size 269972 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL5324.tpmap.bz2 36.7 Mb (ftp)(http) TPMAP

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