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GEO accession:
Platform GPL5407
Query DataSets for GPL5407
Status
Public on Sep 29, 2007
Title
Farnham human whole genome Hg17Tiling Set27
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens
Manufacturer
Nimblegen Systems, Inc.
Manufacture protocol
as described on Nimblegen website
Catalog number
C4524-27-01 (note: this cat# corresponds to the Build_HG18 38-array Tiling Set)
Description
Probes are 50bp long, separated by 100bp.
Submission date
Jun 21, 2007
Last update date
Sep 29, 2007
Contact name
Kimberly Rose Blahnik
E-mail(s)
krblahnik@ucdavis.edu
Organization name
University of California Davis
Department
Genome and Biomedical Sciences
Lab
Peggy Farnham
Street address
GBSF 1 Shields Ave
City
Davis
State/province
CA
ZIP/Postal code
95616
Country
USA
Samples (1)
GSM214960
Series (1)
GSE8667
Genome-wide Analysis of KAP1 Binding Suggests Auto-regulation of KRAB-ZNFs
Data table header descriptions
ID
CHROMOSOME
chromsome number
RANGE_GB
GenBank accession.version
RANGE_STRAND
always plus
RANGE_START
startpoint in genbank chromosome
RANGE_END
endpoint in genbank chromosome
Data table
ID
CHROMOSOME
RANGE_GB
RANGE_STRAND
RANGE_START
RANGE_END
chr12P100001255
chr12
NC_000012.9
+
100001255
100001305
chr12P100001355
chr12
NC_000012.9
+
100001355
100001405
chr12P100001455
chr12
NC_000012.9
+
100001455
100001505
chr12P100002592
chr12
NC_000012.9
+
100002592
100002642
chr12P100002692
chr12
NC_000012.9
+
100002692
100002742
chr12P100002842
chr12
NC_000012.9
+
100002842
100002892
chr12P100002980
chr12
NC_000012.9
+
100002980
100003030
chr12P100003080
chr12
NC_000012.9
+
100003080
100003130
chr12P100003180
chr12
NC_000012.9
+
100003180
100003230
chr12P100003280
chr12
NC_000012.9
+
100003280
100003330
chr12P100003380
chr12
NC_000012.9
+
100003380
100003430
chr12P100003480
chr12
NC_000012.9
+
100003480
100003530
chr12P100003580
chr12
NC_000012.9
+
100003580
100003630
chr12P100003680
chr12
NC_000012.9
+
100003680
100003730
chr12P100003780
chr12
NC_000012.9
+
100003780
100003830
chr12P100003880
chr12
NC_000012.9
+
100003880
100003930
chr12P100003980
chr12
NC_000012.9
+
100003980
100004030
chr12P100004080
chr12
NC_000012.9
+
100004080
100004130
chr12P100004180
chr12
NC_000012.9
+
100004180
100004230
chr12P100004280
chr12
NC_000012.9
+
100004280
100004330
Total number of rows:
384957
Table truncated, full table size
20401 Kbytes
.
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