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Status
Public on Dec 19, 2003
Title
Rosetta (Merck) Splicing Experiment, Chip 2 of 5
Technology type
spotted oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens
Description
Oligonucleotide array on glass. Contains 36-mer probes on 10-mer T stilts (46-mer), each spanning an exon-exon junction. Submitted for Science publication Johnson et al. Keywords = junction splicing oligonucleotide
Web link
http://www.rii.com
Contributor(s)
Johnson JM , Castle J , Garrett-Engele P , Loerch PM , Kan Z , Armour CD , Santos R , Schadt EE , Stoughton R , Shoemaker DD
Submission date
Oct 14, 2003
Last update date
Jan 18, 2013
Contact name
John Castle
E-mail(s)
john_castle@merck.com
Phone
425-636-6337
Organization name
Merck
Department
Informatics
Lab
Rosetta
Street address
12040 115th Ave NE
City
Kirkland
State/province
WA
ZIP/Postal code
98034
Country
USA
Samples (50)
GSM11243 , GSM11244 , GSM11245 , GSM11246 , GSM11247 , GSM11248
GSM11249 ,
GSM11250 ,
GSM11251 ,
GSM11252 ,
GSM11253 ,
GSM11254 ,
GSM11255 ,
GSM11256 ,
GSM11257 ,
GSM11258 ,
GSM11259 ,
GSM11260 ,
GSM11261 ,
GSM11262 ,
GSM11263 ,
GSM11264 ,
GSM11265 ,
GSM11266 ,
GSM11267 ,
GSM28724 ,
GSM28725 ,
GSM28726 ,
GSM28727 ,
GSM28728 ,
GSM28729 ,
GSM28730 ,
GSM28731 ,
GSM28732 ,
GSM28733 ,
GSM28734 ,
GSM28735 ,
GSM28736 ,
GSM28737 ,
GSM28738 ,
GSM28739 ,
GSM28740 ,
GSM28741 ,
GSM28742 ,
GSM28743 ,
GSM28744 ,
GSM28745 ,
GSM28746 ,
GSM28747 ,
GSM28748
Series (1)
GSE740
Rosetta_Merck_Splicing_Experiment
Data table header descriptions
ID
Rosetta generated unique probe identifier
GENE_SYMBOL
Gene name from Locus Link as of November, 2001.
GB_ACC
RefSeq Accession Number of sequence used to design oligonucleotide probe, based on NCBI file hs.fna as of November 2001.
EXON1
5prime exon of the junction probe, as defined by RefSeq mRNA, NCBI conting, and sim4 as of November, 2001
EXON2
3prime exon of the junction probe, as defined by RefSeq mRNA, NCBI conting, and sim4 as of November, 2001
SPOT_ID
GENOMIC_CONTIG
Accession number of NCBI genomic contig used. As of November, 2001 and specified by LocusLink
SEQUENCE
Sequence of oligonucleotide probe
Total number of rows: 23107 Table truncated, full table size 2653 Kbytes .
Supplementary data files not provided