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Status
Public on Oct 08, 2008
Title
DIPROVAL - OPERON Sus scrofa AROS V1.0
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Sus scrofa Manufacturer
MicroCribi - CRIBI Microarray Service - University of Padua, Laboratory: prof. G. Lanfranchi, c/o CRIBI, via Ugo bassi 58/B 35131 PADOVA, tel. 0039-049 8276162, fax 0039-049827 6159, http://microcribi.cribi.unipd.it
Manufacture protocol
The Array-Ready Pig Genome Oligo Set Version 1.0 from Operon Biotechnologies was dissolved in 3XSSC and spotted using a MicroGrid II (BioRobotics) microarrayer onto Micromax SuperChipI glass slides (Perkin Elmer Life Sciences). The oligos were crosslinked (600 mJoules) onto the glass using a Stratalinker UV crosslinker (Stratagene).
Support
glass
Coating
aminosilane
Description
This work was supported by a grant from FIRB of the Ministry of Education, University and Research (MIUR) of Italy –Scientific responsible person: Prof. Vincenzo Russo
Contributor(s)
Davoli R , Cagnin S , Pacchioni B , Millino C , Celegato B , Lanfranchi G Submission date
Jul 04, 2007
Last update date
Oct 08, 2008
Contact name
Roberta Davoli
E-mail(s)
roberta.davoli@unibo.it Phone
+390522290507
Fax
+390522290523
Organization name
University of Bologna
Department
Dipartimento di Protezione e Valorizzazione Agroalimentare
Street address
Via Fratelli Rosselli 107 -Villa Levi- Coviolo-
City
Reggio Emilia
ZIP/Postal code
42100
Country
Italy
Samples (36)
GSM328615 , GSM328616 , GSM328617 , GSM328618 , GSM328619 , GSM328620
GSM328621 ,
GSM328622 ,
GSM328623 ,
GSM328624 ,
GSM328625 ,
GSM328626 ,
GSM328627 ,
GSM328629 ,
GSM328630 ,
GSM328631 ,
GSM328632 ,
GSM328633 ,
GSM328634 ,
GSM328635 ,
GSM328636 ,
GSM328637 ,
GSM328638 ,
GSM328639 ,
GSM328640 ,
GSM328641 ,
GSM328642 ,
GSM328643 ,
GSM328644 ,
GSM328645 ,
GSM328646 ,
GSM328647 ,
GSM328648 ,
GSM328649 ,
GSM328650 ,
GSM328651 Series (1)
GSE13115 Gene expression studies to identify skeletal muscle genes related to stress in pigs
Data table header descriptions ID Block Metacolumn Metarow Column Row Operon_oligo_ID Name gene_id Gene ID associated with SsGI.release_10 from the TIGR gene index
top_hit_human_RefSeq human_RefSeq_description top_hit_mouse_RefSeq Mouse_RefSeq_description top_hit_pig_known_gene top_hit_human_Ensembl top_hit_mouse_Ensembl SPOT_ID SEQUENCE oligo sequence
Data table ID Block Metacolumn Metarow Column Row Operon_oligo_ID Name gene_id top_hit_human_RefSeq human_RefSeq_description top_hit_mouse_RefSeq Mouse_RefSeq_description top_hit_pig_known_gene top_hit_human_Ensembl top_hit_mouse_Ensembl SPOT_ID SEQUENCE ALIGNEMENT GRID.1
1
1
1
1
1
ALIGNEMENT GRID
ALIGNEMENT GRID
ALIGNEMENT GRID
ALIGNEMENT GRID.2
1
1
1
2
1
ALIGNEMENT GRID
ALIGNEMENT GRID
ALIGNEMENT GRID
ALIGNEMENT GRID.3
1
1
1
3
1
ALIGNEMENT GRID
ALIGNEMENT GRID
ALIGNEMENT GRID
ALIGNEMENT GRID.4
1
1
1
4
1
ALIGNEMENT GRID
ALIGNEMENT GRID
ALIGNEMENT GRID
ALIGNEMENT GRID.5
1
1
1
5
1
ALIGNEMENT GRID
ALIGNEMENT GRID
ALIGNEMENT GRID
ALIGNEMENT GRID.6
1
1
1
6
1
ALIGNEMENT GRID
ALIGNEMENT GRID
ALIGNEMENT GRID
ALIGNEMENT GRID.7
1
1
1
7
1
ALIGNEMENT GRID
ALIGNEMENT GRID
ALIGNEMENT GRID
ALIGNEMENT GRID.8
1
1
1
8
1
ALIGNEMENT GRID
ALIGNEMENT GRID
ALIGNEMENT GRID
ALIGNEMENT GRID.9
1
1
1
18
1
ALIGNEMENT GRID
ALIGNEMENT GRID
ALIGNEMENT GRID
ALIGNEMENT GRID.10
1
1
1
19
1
ALIGNEMENT GRID
ALIGNEMENT GRID
ALIGNEMENT GRID
ALIGNEMENT GRID.11
1
1
1
20
1
ALIGNEMENT GRID
ALIGNEMENT GRID
ALIGNEMENT GRID
ALIGNEMENT GRID.12
1
1
1
21
1
ALIGNEMENT GRID
ALIGNEMENT GRID
ALIGNEMENT GRID
ALIGNEMENT GRID.13
1
1
1
22
1
ALIGNEMENT GRID
ALIGNEMENT GRID
ALIGNEMENT GRID
ALIGNEMENT GRID.14
1
1
1
23
1
ALIGNEMENT GRID
ALIGNEMENT GRID
ALIGNEMENT GRID
ALIGNEMENT GRID.15
1
1
1
1
2
ALIGNEMENT GRID
ALIGNEMENT GRID
ALIGNEMENT GRID
SS00000100.1
1
1
1
2
2
SS00000100
homologue to UP|TCPH_HUMAN (Q99832) T-complex protein 1, eta subunit (TCP-1-eta) (CCT-eta) (HIV-1 Nef interacting protein), complete
TC161978
NM_006429
Homo sapiens chaperonin containing TCP1, subunit 7 (eta) (CCT7), mRNA
NM_007638
Mus musculus chaperonin subunit 7 (eta) (Cct7), mRNA
ENST00000258091
ENSMUST00000032078
TIGR:TC161978
TGAAACCCTATGTGGAAGAAGGTTTGCACCCACAGATCATCATCCGAGCTTTCCGCACTGCCACTCAGCT
SS00000124.1
1
1
1
3
2
SS00000124
homologue to GB|AAH22487.1|18490905|BC022487 GCLC protein {Homo sapiens;} , partial (90%)
TC187193
NM_001498
Homo sapiens glutamate-cysteine ligase, catalytic subunit (GCLC), mRNA
NM_010295
Mus musculus glutamate-cysteine ligase, catalytic subunit (Gclc), mRNA
ENST00000229416
ENSMUST00000034905
TIGR:TC187193
CAAGCACCCGCGTTTCAGTACCCTAACAAGAAACATCCGGCACAGGAGAGGGGAGAAAGTTGTCATCAAT
SS00000148.1
1
1
1
4
2
SS00000148
homologue to UP|KAP2_BOVIN (P00515) cAMP-dependent protein kinase type II-alpha regulatory chain, partial (49%)
TC192505
NM_004157
Homo sapiens protein kinase, cAMP-dependent, regulatory, type II, alpha (PRKAR2A), mRNA
NM_008924
Mus musculus protein kinase, cAMP dependent regulatory, type II alpha (Prkar2a), mRNA
ENST00000296446
ENSMUST00000035220
TIGR:TC192505
CAAACAGAAAATATGACAGAACTATTCCTGCTGTTGCCACCACTGCTGCCATTGCTATGGCCATGGGCAT
SS00000172.1
1
1
1
5
2
SS00000172
homologue to UP|Q9N0E7 (Q9N0E7) Molybdopterin cofactor sulfurase, partial (28%)
TC173606
NM_017947
Homo sapiens molybdenum cofactor sulfurase (MOCOS), mRNA
XM_484710
PREDICTED: Mus musculus molybdenum cofactor sulfurase (Mocos), mRNA
ENST00000261326
ENSMUST00000067998
TIGR:TC173606
GACGTGATAGCACTAAAACATGGATTTGATGCCTTAGAGAACCTCACAGGTGGAATGGAGTGCATCAGGC
SS00000106.1
1
1
1
6
2
SS00000106
UP|Q99J95 (Q99J95) Cyclin-dependent kinase 9, complete
TC163058
NM_001261
Homo sapiens cyclin-dependent kinase 9 (CDC2-related kinase) (CDK9), mRNA
NM_130860
Mus musculus cyclin-dependent kinase 9 (CDC2-related kinase) (Cdk9), mRNA
ENST00000259329
ENSMUST00000009699
TIGR:TC163058
GCTCCTAAAACACGAGAACGTGGTCAACCTGATTGAGATCTGTCGAACCAAAGCTTCCCCCTATAACCGC
24336 8324 Kbytes .Supplementary data files not provided
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