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Platform GPL5533 Query DataSets for GPL5533
Status Public on Nov 18, 2007
Title 2005-09-28_Crawford_HG17_Set01
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Nimblegen
Manufacture protocol Oligonucleotides spaced approximately every 100 base pairs across the entire non-repetitive human genome were synthesized in situ on a 38-array set.
 
 
Contributor(s) Davis S, Crawford GE
Submission date Jul 13, 2007
Last update date Nov 18, 2007
Contact name Sean Davis
E-mail(s) sdavis2@mail.nih.gov
Phone 301-435-2652
Organization name National Cancer Institute
Lab Genetics Branch
Street address 37 Convent Drive, Room 6138
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Samples (1) GSM210490
Series (1)
GSE8486 Whole genome DNAse hypersensitivity in human CD4+ T-cells

Data table header descriptions
ID Feature Match index
PROBE_DESIGN_ID PROBE_DESIGN_ID
SEQUENCE Actual sequence of probe
PROBE_ID Probe ID
X Physical X position on array
Y Physical Y position on array
chromosome Chromosome Name [build 35]
RANGE_START Start location on chromosome [build 35 coordinates]
RANGE_END End location on chromosome [build 35 coordinates]
RANGE_STRAND Strand of probe
RANGE_GB RefSeq genome accession for chromosome (NCBI35 build)
SPOT_ID spot identifier

Data table
ID PROBE_DESIGN_ID SEQUENCE PROBE_ID X Y chromosome RANGE_START RANGE_END RANGE_STRAND RANGE_GB SPOT_ID
52488902 2605_0001_0001 TCTGGTCATGATTCCATCCTGCTTCACAGACACATTTCCCACAATTTCCT chr1P769384 1 1 chr1 769384 769433 + NC_000001.8
51312160 2605_0004_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 4 1 NA 0 0 CPK6
51312170 2605_0006_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 6 1 NA 0 0 CPK6
51312171 2605_0008_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 8 1 NA 0 0 CPK6
51312172 2605_0010_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 10 1 NA 0 0 CPK6
51312173 2605_0012_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 12 1 NA 0 0 CPK6
51312174 2605_0014_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 14 1 NA 0 0 CPK6
51312175 2605_0016_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 16 1 NA 0 0 CPK6
51312176 2605_0018_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 18 1 NA 0 0 CPK6
51312177 2605_0020_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 20 1 NA 0 0 CPK6
51312178 2605_0022_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 22 1 NA 0 0 CPK6
52568363 2605_0025_0001 GACCTAGTCGCTCCCATCACCCCGAGGGCACCCAGAGTGTGTGTGGCTGA chr1P27244573 25 1 chr1 27244573 27244622 + NC_000001.8
52525679 2605_0027_0001 GCTTCTTCTCTGTCTGCTGAATTCTCCTGCACAAGAGTCACCACTTAGTG chr1P68197928 27 1 chr1 68197928 68197977 + NC_000001.8
52715023 2605_0029_0001 ACAAATAAGCAAAAAAAAAGAAAGTATATGTTTTGAAAGAGCAAGAATAT chr1P56224766 29 1 chr1 56224766 56224815 + NC_000001.8
52567785 2605_0031_0001 TCCCCACTGATACTGTTAACCCTTTGGGGTTTTATGTATATAAAGTGCAC chr1P25508078 31 1 chr1 25508078 25508127 + NC_000001.8
52780315 2605_0033_0001 TCTGCTCAGGTGTAAATATTTCCAAGGCAGCTGCATGGAATGGAAGTTTG chr1P4959449 33 1 chr1 4959449 4959498 + NC_000001.8
52487969 2605_0035_0001 CATAGTATCAGGGGAGTGTTACCCCATTTCCTGGCTTCATGGGCTGTGTT chr1P67896831 35 1 chr1 67896831 67896880 + NC_000001.8
52655615 2605_0037_0001 CCTCCCTCCCTGTCAGCTAGACAACTCCTGCCCACACATCTCCTTTGTGT chr1P69747012 37 1 chr1 69747012 69747061 + NC_000001.8
52768951 2605_0039_0001 CCAGAGAATGTAAACTGATGTCTATGCTGGTAAATCATGAAACACAATAT chr1P75504990 39 1 chr1 75504990 75505039 + NC_000001.8
52861330 2605_0041_0001 AATAGCAGTGTGTATACTCTCAAAACAGGTAACAACAATAATAATAATGA chr1P63090092 41 1 chr1 63090092 63090141 + NC_000001.8

Total number of rows: 391015

Table truncated, full table size 51180 Kbytes.




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Supplementary data files not provided
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