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Platform GPL5534 Query DataSets for GPL5534
Status Public on Nov 18, 2007
Title 2005-09-28_Crawford_HG17_Set02
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Nimblegen
Manufacture protocol Oligonucleotides spaced approximately every 100 base pairs across the entire non-repetitive human genome were synthesized in situ on a 38-array set.
 
 
Contributor(s) Davis S, Crawford GE
Submission date Jul 13, 2007
Last update date Nov 18, 2007
Contact name Sean Davis
E-mail(s) sdavis2@mail.nih.gov
Phone 301-435-2652
Organization name National Cancer Institute
Lab Genetics Branch
Street address 37 Convent Drive, Room 6138
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Samples (1) GSM210491
Series (1)
GSE8486 Whole genome DNAse hypersensitivity in human CD4+ T-cells

Data table header descriptions
ID Feature Match index
PROBE_DESIGN_ID PROBE_DESIGN_ID
SEQUENCE Actual sequence of probe
PROBE_ID Probe ID
X Physical X position on array
Y Physical Y position on array
chromosome Chromosome Name [build 35]
RANGE_START Start location on chromosome [build 35 coordinates]
RANGE_END End location on chromosome [build 35 coordinates]
RANGE_STRAND Strand of probe
RANGE_GB RefSeq genome accession for chromosome (NCBI35 build)
SPOT_ID spot identifier

Data table
ID PROBE_DESIGN_ID SEQUENCE PROBE_ID X Y chromosome RANGE_START RANGE_END RANGE_STRAND RANGE_GB SPOT_ID
52869180 2606_0001_0001 ACACTGTAATTTATAGGGTCAGGAAACACTCTTAAACCTGGCTAGACTGT chr1P171789901 1 1 chr1 171789901 171789950 + NC_000001.8
51312160 2606_0004_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 4 1 NA 0 0 CPK6
51312170 2606_0006_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 6 1 NA 0 0 CPK6
51312171 2606_0008_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 8 1 NA 0 0 CPK6
51312172 2606_0010_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 10 1 NA 0 0 CPK6
51312173 2606_0012_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 12 1 NA 0 0 CPK6
51312174 2606_0014_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 14 1 NA 0 0 CPK6
51312175 2606_0016_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 16 1 NA 0 0 CPK6
51312176 2606_0018_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 18 1 NA 0 0 CPK6
51312177 2606_0020_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 20 1 NA 0 0 CPK6
51312178 2606_0022_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 22 1 NA 0 0 CPK6
52638191 2606_0025_0001 ATCTATTTGGTTACCGGGAGTGTGGCTGGTTTCTGTTGCCTGTTTTGATA chr1P171575241 25 1 chr1 171575241 171575290 + NC_000001.8
52740888 2606_0027_0001 TAGCTCTGGGGTTTCTGGGCAGTCCTATTGGCTGAAAGCTGGGGAGGCTG chr1P148787319 27 1 chr1 148787319 148787368 + NC_000001.8
52639156 2606_0029_0001 GTGTTATTGATTAAAGAGAGATTAGAAATGGAAATTGGAAATACTTAAAT chr1P113792540 29 1 chr1 113792540 113792589 + NC_000001.8
52845121 2606_0031_0001 CTTTGCCAAATGAGAACACAATATTTTTTATCTCTTAGAATACACCAACA chr1P167047135 31 1 chr1 167047135 167047184 + NC_000001.8
52853565 2606_0033_0001 TAATTCATCTTAAGTTCTAAATTGAAGAGTTGTCCCCATGACTTTAGCTA chr1P89159030 33 1 chr1 89159030 89159079 + NC_000001.8
52602445 2606_0035_0001 AGAATTAAAAAGACATTGACAGGAATTGATAAACACTGTGTTTCATTTAG chr1P115517507 35 1 chr1 115517507 115517556 + NC_000001.8
52523086 2606_0037_0001 TGCGGTGGGGTGCGGGCGCGGGCCGTGGGTCCTCGGGTGCGGACGCCCAG chr1P153977651 37 1 chr1 153977651 153977700 + NC_000001.8
52790703 2606_0039_0001 AATTTGTTAAGAAAGACATGGAGAAGATAGTAAAGATGGACTAGTTAATA chr1P160356954 39 1 chr1 160356954 160357003 + NC_000001.8
52778718 2606_0041_0001 TACTAATTGGGAAAAGTAGAAACCTAGTTTAGATATTTGAGAGTTACTTA chr1P142446065 41 1 chr1 142446065 142446114 + NC_000001.8

Total number of rows: 391015

Table truncated, full table size 52149 Kbytes.




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Supplementary data files not provided
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