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Platform GPL5535 Query DataSets for GPL5535
Status Public on Nov 18, 2007
Title 2005-09-28_Crawford_HG17_Set03
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Nimblegen
Manufacture protocol Oligonucleotides spaced approximately every 100 base pairs across the entire non-repetitive human genome were synthesized in situ on a 38-array set.
 
 
Contributor(s) Davis S, Crawford GE
Submission date Jul 13, 2007
Last update date Nov 18, 2007
Contact name Sean Davis
E-mail(s) sdavis2@mail.nih.gov
Phone 301-435-2652
Organization name National Cancer Institute
Lab Genetics Branch
Street address 37 Convent Drive, Room 6138
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Samples (1) GSM210492
Series (1)
GSE8486 Whole genome DNAse hypersensitivity in human CD4+ T-cells

Data table header descriptions
ID Feature Match index
PROBE_DESIGN_ID PROBE_DESIGN_ID
SEQUENCE Actual sequence of probe
PROBE_ID Probe ID
X Physical X position on array
Y Physical Y position on array
chromosome Chromosome Name [build 35]
RANGE_START Start location on chromosome [build 35 coordinates]
RANGE_END End location on chromosome [build 35 coordinates]
RANGE_STRAND Strand of probe
RANGE_GB RefSeq genome accession for chromosome (NCBI35 build)
SPOT_ID spot identifier

Data table
ID PROBE_DESIGN_ID SEQUENCE PROBE_ID X Y chromosome RANGE_START RANGE_END RANGE_STRAND RANGE_GB SPOT_ID
52615168 2607_0001_0001 CATTTTAACCAACTGAGAGGTGACTTGTAAGTAATCTATTACAAATAATA chr1P196603495 1 1 chr1 196603495 196603544 + NC_000001.8
51312160 2607_0004_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 4 1 NA 0 0 CPK6
51312170 2607_0006_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 6 1 NA 0 0 CPK6
51312171 2607_0008_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 8 1 NA 0 0 CPK6
51312172 2607_0010_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 10 1 NA 0 0 CPK6
51312173 2607_0012_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 12 1 NA 0 0 CPK6
51312174 2607_0014_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 14 1 NA 0 0 CPK6
51312175 2607_0016_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 16 1 NA 0 0 CPK6
51312176 2607_0018_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 18 1 NA 0 0 CPK6
51312177 2607_0020_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 20 1 NA 0 0 CPK6
51312178 2607_0022_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 22 1 NA 0 0 CPK6
52768683 2607_0025_0001 TTGCAAAATGAGTTCTCCATTCATGGTCTTATTTTAACAGTCTAGAATAT chr1P183161560 25 1 chr1 183161560 183161609 + NC_000001.8
52784453 2607_0027_0001 AGTACATGTGGGGAACACAGAGCCCCATCAAATGAAAAGAGATGGAGTGC chr1P218572002 27 1 chr1 218572002 218572051 + NC_000001.8
52861941 2607_0029_0001 TGAAATTTGGCATGCCAGCTGAGCCATGACATCGTCTACCTTCTGTCACC chr1P235881779 29 1 chr1 235881779 235881828 + NC_000001.8
52649346 2607_0031_0001 TCCTTAAGAAGAAAAGTACGCTTAATTGGCAACACAGTCACAGTATGACA chr1P204146270 31 1 chr1 204146270 204146319 + NC_000001.8
52524709 2607_0033_0001 ACAGTAACACAATGCAGCTTTTTATTCTCTTTCCCTTGCAGGTGAAATGA chr1P190176216 33 1 chr1 190176216 190176265 + NC_000001.8
52733975 2607_0035_0001 CACCCCCAGCTTGCCTTGCTCACTGGATGCTTATTACAGTGACCTGAAGG chr1P228131348 35 1 chr1 228131348 228131397 + NC_000001.8
52859530 2607_0037_0001 GGTTCTGGGTGATTTTGCACATATTTATTTCAAAGATCCTCCGTACCACA chr1P194857175 37 1 chr1 194857175 194857224 + NC_000001.8
52814447 2607_0039_0001 AAATGAGGCCAGTGTTTTGCTTTGGTGTTGATAATATTTGTTGAAAAGTT chr1P195673649 39 1 chr1 195673649 195673698 + NC_000001.8
52668407 2607_0041_0001 TAGAGAAGTTATCAGCACAATAGGAAGGGAATTATGAAGTTGACTGCAGT chr1P230859478 41 1 chr1 230859478 230859527 + NC_000001.8

Total number of rows: 391015

Table truncated, full table size 52732 Kbytes.




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