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Platform GPL5537 Query DataSets for GPL5537
Status Public on Nov 18, 2007
Title 2005-09-28_Crawford_HG17_Set05
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Nimblegen
Manufacture protocol Oligonucleotides spaced approximately every 100 base pairs across the entire non-repetitive human genome were synthesized in situ on a 38-array set.
 
 
Contributor(s) Davis S, Crawford GE
Submission date Jul 13, 2007
Last update date Nov 18, 2007
Contact name Sean Davis
E-mail(s) sdavis2@mail.nih.gov
Phone 301-435-2652
Organization name National Cancer Institute
Lab Genetics Branch
Street address 37 Convent Drive, Room 6138
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Samples (1) GSM210494
Series (1)
GSE8486 Whole genome DNAse hypersensitivity in human CD4+ T-cells

Data table header descriptions
ID Feature Match index
PROBE_DESIGN_ID PROBE_DESIGN_ID
SEQUENCE Actual sequence of probe
PROBE_ID Probe ID
X Physical X position on array
Y Physical Y position on array
chromosome Chromosome Name [build 35]
RANGE_START Start location on chromosome [build 35 coordinates]
RANGE_END End location on chromosome [build 35 coordinates]
RANGE_STRAND Strand of probe
RANGE_GB RefSeq genome accession for chromosome (NCBI35 build)
SPOT_ID spot identifier

Data table
ID PROBE_DESIGN_ID SEQUENCE PROBE_ID X Y chromosome RANGE_START RANGE_END RANGE_STRAND RANGE_GB SPOT_ID
52853029 2609_0001_0001 CTGGATAACCCTCTTATTTTTGAAACTTTTCCTTTTAACATATGACTTGA chr2P141612964 1 1 chr2 141612964 141613013 + NC_000002.9
51312160 2609_0004_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 4 1 NA 0 0 CPK6
51312170 2609_0006_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 6 1 NA 0 0 CPK6
51312171 2609_0008_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 8 1 NA 0 0 CPK6
51312172 2609_0010_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 10 1 NA 0 0 CPK6
51312173 2609_0012_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 12 1 NA 0 0 CPK6
51312174 2609_0014_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 14 1 NA 0 0 CPK6
51312175 2609_0016_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 16 1 NA 0 0 CPK6
51312176 2609_0018_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 18 1 NA 0 0 CPK6
51312177 2609_0020_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 20 1 NA 0 0 CPK6
51312178 2609_0022_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 22 1 NA 0 0 CPK6
52657284 2609_0025_0001 CCGAGCATATGGAGCTCTGAGCAGAGGGTGCTCAGAGCAAGATGGAGTTT chr2P132282678 25 1 chr2 132282678 132282727 + NC_000002.9
52785037 2609_0027_0001 TTATTTGTGATTGCAATAATTTCTGTTTCCTCTTTATAATATTAGGTGCA chr2P94904420 27 1 chr2 94904420 94904469 + NC_000002.9
52514519 2609_0029_0001 TATGGCATTCCAATTTTACCTGGAAGGGAGATGCAGCTACCAGCTGTTTC chr2P97072254 29 1 chr2 97072254 97072303 + NC_000002.9
52498930 2609_0031_0001 GATTGTCACAGAGATGGTAGAAATTATGATCTGACTGGAAAACAATCCTG chr2P120768410 31 1 chr2 120768410 120768459 + NC_000002.9
52770389 2609_0033_0001 GTTTTCTTTGAGGCACCAGACAACGAAAGCCACGAGACACAGCCTACTGT chr2P111839627 33 1 chr2 111839627 111839676 + NC_000002.9
52538290 2609_0035_0001 AGTCACAGAGGCTGGGAATTCCATGGACGGCCCAGGGATCTCAACACAAT chr2P107170770 35 1 chr2 107170770 107170819 + NC_000002.9
52613013 2609_0037_0001 ATAACGCTGGGATTCAGAGGGCTCTCATTAACCCCTTAGGCGCTCCTGTA chr2P72284741 37 1 chr2 72284741 72284790 + NC_000002.9
52768667 2609_0039_0001 ATACTTTTGTAAATTTCCAGATAATTTAGAGTTTCAATCTTATTTTCTCT chr2P108853412 39 1 chr2 108853412 108853461 + NC_000002.9
52836415 2609_0041_0001 TCCTCCAGGTGATGACACCAGGCGCTGGTGGTGACAGCTCCTCACTGGCT chr2P73397452 41 1 chr2 73397452 73397501 + NC_000002.9

Total number of rows: 391015

Table truncated, full table size 52131 Kbytes.




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Supplementary data files not provided
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