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Platform GPL5550 Query DataSets for GPL5550
Status Public on Nov 18, 2007
Title 2005-09-28_Crawford_HG17_Set18
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Nimblegen
Manufacture protocol Oligonucleotides spaced approximately every 100 base pairs across the entire non-repetitive human genome were synthesized in situ on a 38-array set.
 
 
Contributor(s) Davis S, Crawford GE
Submission date Jul 13, 2007
Last update date Nov 18, 2007
Contact name Sean Davis
E-mail(s) sdavis2@mail.nih.gov
Phone 301-435-2652
Organization name National Cancer Institute
Lab Genetics Branch
Street address 37 Convent Drive, Room 6138
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Samples (1) GSM210507
Series (1)
GSE8486 Whole genome DNAse hypersensitivity in human CD4+ T-cells

Data table header descriptions
ID Feature Match index
PROBE_DESIGN_ID PROBE_DESIGN_ID
SEQUENCE Actual sequence of probe
PROBE_ID Probe ID
X Physical X position on array
Y Physical Y position on array
chromosome Chromosome Name [build 35]
RANGE_START Start location on chromosome [build 35 coordinates]
RANGE_END End location on chromosome [build 35 coordinates]
RANGE_STRAND Strand of probe
RANGE_GB RefSeq genome accession for chromosome (NCBI35 build)
SPOT_ID spot identifier

Data table
ID PROBE_DESIGN_ID SEQUENCE PROBE_ID X Y chromosome RANGE_START RANGE_END RANGE_STRAND RANGE_GB SPOT_ID
52706704 2622_0001_0001 TGAGGGTGTGAGCTGTTGTTTAAGGATAAACTGTCATGCTTCAGCCTAAA chr7P95820753 1 1 chr7 95820753 95820802 + NC_000007.11
51312160 2622_0004_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 4 1 NA 0 0 CPK6
51312170 2622_0006_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 6 1 NA 0 0 CPK6
51312171 2622_0008_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 8 1 NA 0 0 CPK6
51312172 2622_0010_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 10 1 NA 0 0 CPK6
51312173 2622_0012_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 12 1 NA 0 0 CPK6
51312174 2622_0014_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 14 1 NA 0 0 CPK6
51312175 2622_0016_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 16 1 NA 0 0 CPK6
51312176 2622_0018_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 18 1 NA 0 0 CPK6
51312177 2622_0020_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 20 1 NA 0 0 CPK6
51312178 2622_0022_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 22 1 NA 0 0 CPK6
52577118 2622_0025_0001 TCACTGAGCTCTTCAGAAAACAGCAGCTAACCTAAAGTGCTTAACTGGAA chr7P132699077 25 1 chr7 132699077 132699126 + NC_000007.11
52588951 2622_0027_0001 TTCTAACTTTAAGGACCTGCCTATAGCCAGCTTTTCTGTGAAATCATTCC chr7P113084369 27 1 chr7 113084369 113084418 + NC_000007.11
52869142 2622_0029_0001 TGTAAGGACCATATTGTTTTTATGAGAAGATTTTTATTTTATTTTACATT chr7P85604819 29 1 chr7 85604819 85604868 + NC_000007.11
52654307 2622_0031_0001 TGAGGAGTTTTGGAAAAAGAGTTTAGCTTAGAGAGGGATGAGGGTGAGAA chr7P94140128 31 1 chr7 94140128 94140177 + NC_000007.11
52789620 2622_0033_0001 GTCGATTTTCTTCAGGCTGTCTTTGGTACTGGCATCCACACTGACATACA chr7P71604391 33 1 chr7 71604391 71604440 + NC_000007.11
52659680 2622_0035_0001 TACCCTGAAGGCAGTGGTTTCTGCATAGACTGAAATGGTGAAAAACAACA chr7P105542657 35 1 chr7 105542657 105542706 + NC_000007.11
52549040 2622_0037_0001 ACAGAGAGGAGGTGTCTACTGGACATTTATGGATTGCATGTGTATTAGAG chr7P78059968 37 1 chr7 78059968 78060017 + NC_000007.11
52718414 2622_0039_0001 GTTTCATTGTACATTTATATTTAGCTTCTGATAATAATTTCATTTTGGTT chr7P113695263 39 1 chr7 113695263 113695312 + NC_000007.11
52568988 2622_0041_0001 CATTTACTTATTTACTTTTTAGAAAAAAAATCTATAATAATCCTAGTATG chr7P113730113 41 1 chr7 113730113 113730162 + NC_000007.11

Total number of rows: 391015

Table truncated, full table size 52410 Kbytes.




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Supplementary data files not provided
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