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Platform GPL5676 Query DataSets for GPL5676
Status Public on Jan 31, 2008
Title Homo sapiens oncogene oligo 2.3k array
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Homo sapiens
Manufacturer Dr. Derek Zieker
Manufacture protocol 65mer Oligos were designed by Sigma Aldrich. Oligos were spotted using a Affymetrix 417 spotter.
Support glass
Coating other
 
Description Epoxy-silane coating.
 
Contributor(s) Zieker D, Knapp B, Nieselt K
Submission date Jul 27, 2007
Last update date Jan 31, 2008
Contact name Kay Nieselt
E-mail(s) kay.nieselt@uni-tuebingen.de
Phone (+49) 70712978981
Organization name Institute for Bioinformatics and Medical Informatics
Department Department for Computer Science
Lab Integrative Transcriptomics
Street address Sand 14
City Tübingen
State/province DE
ZIP/Postal code 72076
Country Germany
 
Samples (15) GSM214711, GSM214713, GSM214717, GSM214718, GSM214720, GSM214721 
Series (2)
GSE8657 Peritoneal Carcinomatosis of gastric cancer
GSE14977 Gender-specific gene response to exercise

Data table header descriptions
ID
Meta Row Meta Row
Meta Column Meta column
Row Row
Column Column
rep_name
bioseq_annot
SEQUENCE oligo sequence
GB_ACC GenBank or RefSeq accession number
ORF Gene Name: The common miRNA name
SPOT_ID spot identifier

Data table
ID Meta Row Meta Column Row Column rep_name bioseq_annot SEQUENCE GB_ACC ORF SPOT_ID
1 1 1 1 1 NM_001627 gi|68163410|ref|NM_001627.2| Homo sapiens activated leukocyte cell adhesion molecule (ALCAM), mRNA GCCTGGATAAAGAGGAAAGCTTACTTGTTTAATGGCAGCCACATGCACGAAGATGCTAAGAAGAA NM_001627
2 1 1 1 2 NM_004933 gi|16507957|ref|NM_004933.2| Homo sapiens cadherin 15, M-cadherin (myotubule) (CDH15), mRNA CCCATGCGGGTCACCTCCCTAGTCCCACCTTTGCCTCCTACCAGTGAACCTCATCTTTGTATGAA NM_004933
3 1 1 1 3 NM_003879 gi|21361768|ref|NM_003879.3| Homo sapiens CASP8 and FADD-like apoptosis regulator (CFLAR), mRNA TGCTGTGATTGTGCCTACGAATAGCCACTGCATACCAACCTGGGCAATATAGCAAGATCCCATCT NM_003879
4 1 1 1 4 NM_006614 gi|27894375|ref|NM_006614.2| Homo sapiens cell adhesion molecule with homology to L1CAM (close homolog of L1) (CHL1), mRNA AGTCTCAAGAATGGTTGGTGGGCATGAGTTCCTAGAGAACTGTCCAAGGGTTGGGAAAATCCAAA NM_006614
5 1 1 1 5 NM_032602 gi|14211940|ref|NM_032602.1| Homo sapiens connexin 62 (CX62), mRNA GGCACAGAACATCAATGGTAAGACAGGCAGCCCTACCGATCATGGAACTATCACAAGAGCTGTTC NM_032602
6 1 1 1 6 NM_019084 gi|40254888|ref|NM_019084.2| Homo sapiens cyclin J (CCNJ), mRNA GGATAGAGATCCCAACTTGAAACAACAGCCAGTGCCTGTGGTAACTTAATGTCTTGTCAAATACT NM_019084
7 1 1 1 7 NM_004064 gi|17978497|ref|NM_004064.2| Homo sapiens cyclin-dependent kinase inhibitor 1B (p27, Kip1) (CDKN1B), mRNA ACAAGCCAAAGTGGCATGTTTTGTGCATTTGTAAATGCTGTGTTGGGTAGAATAGGTTTTCCCCT NM_004064
8 1 1 1 8 NM_213621 gi|752191|gb|R02455.1|R02455 ye82g05.r1 Soares fetal liver spleen 1NFLS Homo sapiens cDNA clone IMAGE:124280 5 , mRNA sequence CCTGTTTCCAATGCCAATTCATCTCAGCAATCACAAGCCAAGGTCTGAACCCTTCCACCAAAAAC NM_213621
9 1 1 1 9 NM_033307 gi|649284|gb|T47302.1|T47302 yb10a08.s1 Stratagene placenta (#937225) Homo sapiens cDNA clone IMAGE:70742 3 , mRNA sequence AATGATAGGGTGGGGCTGATTAGGTCTAATCTCAGGGAACACTGGTTAGTATTTCATGTCTAGGT NM_033307
10 1 1 1 10 NM_001001548 gi|27880321|gb|BX115969.1|BX115969 BX115969 Soares_fetal_liver_spleen_1NFLS_S1 Homo sapiens cDNA clone IMAGp998D134526 ; IMAGE:1849692 5 , mRNA sequence TGCAGAGTCTAGCTATCCGCCAACAGGGGGTGCCGTCCAAATTCATGGCAAATAAAGGGCATTTG NM_001001548
11 1 1 1 11 NM_001263 gi|784101|gb|R27966.1|R27966 yh57d01.s1 Soares placenta Nb2HP Homo sapiens cDNA clone IMAGE:133825 3 similar to SP:YBN9_YEAST P38221 HYPOTHETICAL 51.8 KD PROTEIN IN MRF1-RPL2 INTERGENIC ;, mRNA sequence TGAGGCTTGTACCCTTTCCAGATCCACAGGCATTGCACTGGTCAACCTTTGCATCTTTAATTGGG NM_001263
12 1 1 1 12 NM_020990 gi|27847897|gb|BX108502.1|BX108502 BX108502 Soares retina N2b4HR Homo sapiens cDNA clone IMAGp998A24836 ; IMAGE:363167 5 , mRNA sequence CGGGGTCTCTAGCCGCTGGGTTTCTGCTCCGACCGGAACCTGTACGAGCTGCCAGTGAACGACGG NM_020990
13 1 1 1 13 NM_000166 gi|31542846|ref|NM_000166.2| Homo sapiens gap junction protein, beta 1, 32kDa (connexin 32, Charcot-Marie-Tooth neuropathy, X-linked) (GJB1), mRNA GGAGGAGGTGTCTGGGGTGAGGGAGTTAGGGAGAGAGAAGCAGGCAGATAAGTTGGAGCAGGGGT NM_000166
14 1 1 1 14 NM_002070 gi|49574535|ref|NM_002070.2| Homo sapiens guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 (GNAI2), mRNA CTTCCAAGTGACTCCGTGCCTTGAGTGTGTCTGCGTGTTTACACCCGTCCCTCTGCTGGCCGCCC NM_002070
15 1 1 1 15 NM_004485 gi|21314630|ref|NM_004485.2| Homo sapiens guanine nucleotide binding protein (G protein), gamma 4 (GNG4), mRNA CCAGGCTGTGGGCCGTGGTGGATGTCCCTTGTTTCAGTGGTCCTACAAAGGTAGATGGTGGGCGG NM_004485
16 1 1 1 16 NM_004467 gi|42544188|ref|NM_004467.3| Homo sapiens fibrinogen-like 1 (FGL1), transcript variant 1, mRNA ACAATGGGATTGTCTGGTACACCTGGCATGGGTGGTGGTATTCTCTGAAATCTGTGGTTATGAAA NM_004467
17 1 1 1 17 NM_181339 gi|16307184|gb|BC009681.1| Homo sapiens interleukin 24, mRNA (cDNA clone MGC:8926 IMAGE:3878467), complete cds CCATGCTTCTTTACCCCTCACAATCCTTGCCACAGTGTGGGGCAGTGGATGGGTGCTTAGTAAGT NM_181339
18 1 1 1 18 NM_033137 gi|768942|gb|R14669.1|R14669 yf92a04.r1 Soares infant brain 1NIB Homo sapiens cDNA clone IMAGE:29949 5 , mRNA sequence AAGTCTGTGGATTTCGGGAGATGCCAAAGCATTGTAGGTAAAAAACACCCATGTGGACCCTCGGC NM_033137
19 1 1 2 1 NM_020703 gi|57977278|ref|NM_020703.1| Homo sapiens adhesion molecule with Ig-like domain 1 (AMIGO1), mRNA AGTGTGGTAGAGGAAGAGAAGCATGTCTGAGTTGGATGGGAATGAGGAAGGAGTGAGGGGAAGAA NM_020703
20 1 1 2 2 NM_004063 gi|16507959|ref|NM_004063.2| Homo sapiens cadherin 17, LI cadherin (liver-intestine) (CDH17), mRNA TGTTGCTCTTTGGCTGAAATTCTTCAACTTGGAAATGACACAGACCCACAGAAGGTGTTCAAACA NM_004063

Total number of rows: 2304

Table truncated, full table size 470 Kbytes.




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