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Status
Public on Dec 31, 2007
Title
Arabidopsis thaliana 26k 70-mer spotted oligoarray
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Arabidopsis thaliana Manufacturer
University of Texas at Austin
Manufacture protocol
This oligonucleotide array is produced from the Operon Version 1.0 Array-Ready Oligo set (AROS). The 70-mer oligo was designed from the 3'-end of 26,090 annotated genes. Every 70-mer oligo is spotted once on each slide.
Catalog number
V1.0 AROS
Support
glass
Coating
aminosilane
Description
The 70-mer oligo was designed from the 3'-end of 26,090 annotated genes. Every 70-mer oligo is spotted once on each slide.
Web link
http://omad.operon.com/download/index.php Contributor(s)
Chen ZJ , Ha M , Wang J , Tian L , Lee H , Wei NE , Jiang H , Watson B , Madlung A , Osborn TC , Doerge RW , Comai L Citation(s)
16547097 Submission date
Jul 27, 2007
Last update date
Dec 31, 2007
Contact name
Misook Ha
E-mail(s)
misook.ha@gmail.com Phone
7732795900
Organization name
National Heart Lung Blood Institute
Lab
Laboratory of Epigenome Biology
Street address
NIH
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Samples (18)
GSM213692 , GSM234932 , GSM665966 , GSM665967 , GSM665968 , GSM665969
GSM665970 ,
GSM665971 ,
GSM665972 ,
GSM665973 ,
GSM665974 ,
GSM665975 ,
GSM665976 ,
GSM665977 ,
GSM665978 ,
GSM665979 ,
GSM665980 ,
GSM665981 Series (3)
GSE9512 Reduced DNA methylation in Arabidopsis allopolyploids induces genome-specific changes in gene expression
GSE9513 Duplicate genes increase expression diversity in closely related species and allopolyploids
GSE22276 Genome-wide maps of histone modifications in Arabidopsis thaliana
Data table header descriptions ID SEQUENCE 70-oligomer nucleotide sequence
Name Genes or Clones that can hybridize with probe
ORF locus tag
SPOT_ID spot identifier
Data table ID SEQUENCE Name ORF SPOT_ID A000001_01
AAAGTGGGTAAGACGAGTATGACGGGCACAGCGGTTGGAGTAGATGTAACCGCAGCTCAAAAGATATGGA
AT1G58360
AT1G58360 A000002_01
CTGTTCCAGTTACATCCGAAGCCCAACCTCCAATACTGCCATTGCCTTCCTCTGCAAGACCAACTCAGAA
AT1G26110
AT1G26110 A000003_01
GCTAAAGCAAGTACAAGAGCTGTTTGGACAAGCTGCTGACAATTGCCTGAACATGAAGAAACCTGAATGA
AT4G04780
AT4G04780 A000004_01
AACTTGGCCGAGGTGCAGACCTATGCGTTAGAATGCTAGACAGGGAAGAATTTGGGTCTCAACCATTCTA
AT1G04140
AT1G04140 A000005_01
TGGTCCTGAAGGCATTGCGAAAATGAGAGCTGCTTGCGAGCTTGCTGCTCGGGTTTTAAACTATGCTGGA
AT1G13270
AT1G13270 A000006_01
GATCTATGCAAGTATCTTGAGGTGGTTCGGCCCAAGAATGGGCTTTATGCCATACAGTGCTCCGGCTGAA
AT1G09640
AT1G09640 A000007_01
TTCTCTTCGGACAACTACGTCTTGCCACCATTTATTGGTAAGATGAGTAGACTCAGGGTGCTCGTGATTA
AT1G33560
AT1G33560 A000008_01
CTTTAGGGAAAGAGATCTTAATGTCGGTTCCGAGTTGTCTTCACCTATATCCGGGACTGAATCTTCTTGA
AT1G17615
AT1G17615 A000009_01
AAGCAAGTGCTTTGTGGAAAGCTTCTCAAGTTCCTGTTCGCCAAGAAACTGACACGTGTGACTCCACTGA
AT1G67855
AT1G67855 A000010_01
AAAATTCTGGCGTCGTGAGGAGGAAATCTAACGGCGGAGAAAGGTCCGGTATAGTAGTTCCGGCGTTTCA
AT1G02450
AT1G02450 A000011_01
AAACCCATGAAAATGAACCGACCCATTTGACGAATTCGCGACTCTATGAGTTACTGCTCTCCGATAAGAA
AT1G17665
AT1G17665 A000012_01
TCCAGACGTGGTCAGGTCCTCTGGGTCATCCAATCACAGGCGTTTCAAGAAAGAAGAAAGATAACACCAA
AT1G54610
AT1G54610 A000013_01
AAATGACTCTCGACCGAGCCAGTCTTCCACTTTTGTGCAGTCTGAGCAAAGAGTGGAACCCTCAGAAGCA
AT1G33980
AT1G33980 A000014_01
TTTGACAAAGGATTTCAAGATGAAGGATTGCTTCCTCGGCTGCAAAGACGGTTTGACGACCACCATTTAA
AT1G33640
AT1G33640 A000015_01
AAATGCGTGGATAACTCGTGTGCTAAAGAGGTGATGTGCATTCAATCCCTGAGAGGTAAGAAAGGAGCAA
AT1G17560
AT1G17560 A000016_01
AAAACGATCAGTCAGAGAAAATTGAGACAACGCCAAATCTGGAACCTTCTTCATGCATGAACGGGTTAAA
AT1G09700
AT1G09700 A000017_01
AAACCCCCCGACCAGTGGTGATGACTGGGTTGAATTGTTAGTCAGGGAAGTGTTACAATCGTCTGGTACA
AT1G80040
AT1G80040 A000018_01
AAGCTTTGCGTTTATATTGTGAGGGGCAATGCGTTGACGAAGATTCAAATTGTAGGTGTTGATGCTAAAA
AT1G12170
AT1G12170 A000019_01
AAACTGCTAGTGTTGAGGAAAGAATATGAGCCTGAGCTCTCAAGAACTCTTGAAGCCAAGCTGTTAGAGA
AT1G12150
AT1G12150 A000020_01
AAAGGAAAGACCTGGGAATGTTCGACAAGAAGTGGTTTAGACCCGATGAAGCCTCTGCTCTGAGAATCAA
AT1G60220
AT1G60220
26090 2878 Kbytes .Supplementary data files not provided
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