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Status
Public on Aug 16, 2007
Title
Human 30K 60-mer oligo array
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Homo sapiens Manufacturer
VUMC Microarray Core Facility
Manufacture protocol
The Human Release 2.0 oligonucleotide library, containing 60mer oligonucleotides representing 28830 unique genes as designed by Compugen (San Jose, CA, USA), was obtained from Sigma-Genosys (Zwijndrecht, The Netherlands). The oligonucleotides were dissolved at 10 microM concentration in 50 mM sodium phosphate buffer pH 8.5 and single spotted onto CodeLink slides (Amersham Biosciences), using an OmniGrid 100 microarrayer (Genomic Solutions, Ann Arbor, MI, USA) equipped with SMP3 pins (TeleChem International, Sunnyvale, CA, USA). After printing slides were processed and blocked prior to use according to the manufacturer's protocol.
Support
glass
Coating
other
Description
hydrophilic polymer containing N-hydroxysuccinimide (NHS) ester reactive groups
Web link
http://www.vumc.nl/microarrays Contributor(s)
Ylstra B Submission date
Aug 13, 2007
Last update date
Aug 16, 2007
Contact name
Andrew E Teschendorff
E-mail(s)
a.teschendorff@ucl.ac.uk Phone
+44 02076790727
Organization name
University College London
Department
UCL Cancer Institute/Institute for Women's Health
Street address
72 Huntley Street
City
London
ZIP/Postal code
WC1E 6BT
Country
United Kingdom
Samples (220)
GSM217396 , GSM217397 , GSM217398 , GSM217399 , GSM217400 , GSM217401
GSM217402 ,
GSM217403 ,
GSM217404 ,
GSM217405 ,
GSM217406 ,
GSM217407 ,
GSM217408 ,
GSM217409 ,
GSM217410 ,
GSM217411 ,
GSM217412 ,
GSM217413 ,
GSM217414 ,
GSM217415 ,
GSM217416 ,
GSM217417 ,
GSM217418 ,
GSM217419 ,
GSM217420 ,
GSM217421 ,
GSM217422 ,
GSM217423 ,
GSM217424 ,
GSM217425 ,
GSM217426 ,
GSM217427 ,
GSM217428 ,
GSM217429 ,
GSM217430 ,
GSM217431 ,
GSM217432 ,
GSM217433 ,
GSM217434 ,
GSM217435 ,
GSM217436 ,
GSM217437 ,
GSM217438 ,
GSM217439 ,
GSM217440 ,
GSM217441 ,
GSM217442 ,
GSM217443 ,
GSM217444 ,
GSM217445 ,
GSM217446 ,
GSM217447 ,
GSM217448 ,
GSM217449 ,
GSM217450 ,
GSM217451 ,
GSM217452 ,
GSM217453 ,
GSM217454 ,
GSM217455 ,
GSM217456 ,
GSM217457 ,
GSM217458 ,
GSM217459 ,
GSM217460 ,
GSM217461 ,
GSM217462 ,
GSM217463 ,
GSM217464 ,
GSM217465 ,
GSM217466 ,
GSM217467 ,
GSM217468 ,
GSM217469 ,
GSM217470 ,
GSM217471 ,
GSM217472 ,
GSM217473 ,
GSM217474 ,
GSM217475 ,
GSM217476 ,
GSM217477 ,
GSM217478 ,
GSM217479 ,
GSM217480 ,
GSM217481 ,
GSM217482 ,
GSM217483 ,
GSM217484 ,
GSM217485 ,
GSM217486 ,
GSM217487 ,
GSM217488 ,
GSM217489 ,
GSM217490 ,
GSM217491 ,
GSM217492 ,
GSM217493 ,
GSM217494 ,
GSM217495 ,
GSM217496 ,
GSM217497 ,
GSM217498 ,
GSM217499 ,
GSM217500 ,
GSM217501 ,
GSM217502 ,
GSM217503 ,
GSM217504 ,
GSM217505 ,
GSM217506 ,
GSM217507 ,
GSM217508 ,
GSM217509 ,
GSM217510 ,
GSM217511 ,
GSM217512 ,
GSM217513 ,
GSM217514 ,
GSM217515 ,
GSM217516 ,
GSM217517 ,
GSM217518 ,
GSM217519 ,
GSM217520 ,
GSM217521 ,
GSM217522 ,
GSM217523 ,
GSM217524 ,
GSM217525 ,
GSM217526 ,
GSM217527 ,
GSM217528 ,
GSM217529 ,
GSM217530 ,
GSM217531 ,
GSM217532 ,
GSM217533 ,
GSM217534 ,
GSM217535 ,
GSM217536 ,
GSM217537 ,
GSM217538 ,
GSM217539 ,
GSM217540 ,
GSM217541 ,
GSM217542 ,
GSM217543 ,
GSM217544 ,
GSM217545 ,
GSM217546 ,
GSM217547 ,
GSM217548 ,
GSM217549 ,
GSM217550 ,
GSM217551 ,
GSM217552 ,
GSM217553 ,
GSM217554 ,
GSM217555 ,
GSM217556 ,
GSM217557 ,
GSM217558 ,
GSM217559 ,
GSM217560 ,
GSM217561 ,
GSM217562 ,
GSM217563 ,
GSM217564 ,
GSM217565 ,
GSM217566 ,
GSM217567 ,
GSM217568 ,
GSM217569 ,
GSM217570 ,
GSM217571 ,
GSM217572 ,
GSM217573 ,
GSM217574 ,
GSM217575 ,
GSM217576 ,
GSM217577 ,
GSM217578 ,
GSM217579 ,
GSM217580 ,
GSM217581 ,
GSM217582 ,
GSM217583 ,
GSM217584 ,
GSM217585 ,
GSM217586 ,
GSM217587 ,
GSM217588 ,
GSM217589 ,
GSM217590 ,
GSM217591 ,
GSM217592 ,
GSM217593 ,
GSM217594 ,
GSM217595 ,
GSM217596 ,
GSM217597 ,
GSM217598 ,
GSM217599 ,
GSM217600 ,
GSM217601 ,
GSM217602 ,
GSM217603 ,
GSM217604 ,
GSM217605 ,
GSM217606 ,
GSM217607 ,
GSM217608 ,
GSM217609 ,
GSM217610 ,
GSM217611 ,
GSM217612 ,
GSM217613 ,
GSM217614 ,
GSM217615 Series (1)
GSE8757 High resolution array-CGH and expression profiling identifies a novel genomic subtype of ER negative breast cancer
Data table header descriptions ID oligo identifier
GB_ACC GenBank or RefSeq accession numbers
SEQUENCE sequence
Chromosome chromosome
Start start position (hg18, Mar.2006 assembly)
End end position (hg18, Mar.2006 assembly)
GenBank GenBank accession numbers
Symbol Gene Symbols
Description description
Data table ID GB_ACC SEQUENCE Chromosome Start End GenBank Symbol Description 1
AK024481 GGTTTTCAAACTGTAGAGCTCTGGACTTCTCACTTCTAGGGCAGAGGGAGCCTGAACAAG
1
6260
6319
NA
NA
Homo sapiens mRNA for FLJ00075 protein, partial cds.
2
BC031359 TACAAAGCTGCCTCGAGGTGGGAACACAACATTAATCCAAGAGCAGATCCCTGATCCTAT
1
226874
226933
NA
NA
Homo sapiens, clone IMAGE:4778855, mRNA, partial cds.
3
AK026547 AGACCGCAACCTCAACACCACCTTCTTCAACCCCGCCGGAGGAGGAGACCCCATTCTATA
1
556949
557008
CR590798 , CR590922 , CR595406 , CR595999 , CR597319 , CR598056 , CR598101 , CR598837 , CR599661 , CR600060 , CR600332 , CR600831 , CR601538 , CR602727 , CR604333 , CR605797 , CR606568 , CR608441 , CR609160 , CR612356
NA
Homo sapiens cDNA: FLJ22894 fis, clone KAT04907.
4
AK097327 ACTTGTCCCGTGGTCAGGCCCAGCCAATGGAACGGAATGGAAGTGACTCTGCCCCTTATT
1
744287
744346
AK097327
FAM87B
Homo sapiens cDNA FLJ40008 fis, clone STOMA2005120.
5
NM_024796 TGAACAAACACCGACAGTGAAGGAGAGTGACCTGAGCAAGCAGTAGTGGGGTAAATGGAA
1
751929
751988
AK026292 , BC017762 , NM_024796
FLJ22639
Homo sapiens hypothetical protein FLJ22639 (FLJ22639), mRNA.
6
AK096570 CACAGCCCGTTCTCATAGCAGCACTCCTGTTTAATCAGAGGGATGTTAACGACCAAGTCA
1
782261
782320
AK096570 , BC015393
LOC284591
Homo sapiens cDNA FLJ39251 fis, clone OCBBF2008701.
7
AK056486 AGAGTGCACTTCCGGGTAATCCAGCACCCTGAGGCTTCACTGCTCTCCTGAGAGTTTTCT
1
839135
839194
AK056486 , BC000227 , BC006442
LOC284600
Homo sapiens cDNA FLJ31924 fis, clone NT2RP7005468.
8
BC025320 TCAGGAGAGGACCAGCGTCAGGCTCACTGCGAGGTGCTGCACAGAAAACCCACAGCCAGA
1
842637
842696
BC025320
FLJ39609
Homo sapiens, clone IMAGE:4899575, mRNA.
9
NM_152486 CCCTTGCCGGTCAAACTTCACCCAAGCAGGAGAATGGGACCTTGGCTCTACTTCCAGGGG
1
869308
869367
AF161376 , AK054643 , BC024295 , BC033213 , NM_152486
SAMD11
Homo sapiens hypothetical protein MGC45873 (MGC45873), mRNA.
10
NM_015658 GAAACATACCAGTCTGTGTACAACTGGCAGTATGTGCACTGCCTCTTCCTGTGGTGCCGG
1
877323
877382
AK022756 , AK024284 , AL050019 , BC003555 , BX648399 , NM_015658
NOC2L / SAMD11
Homo sapiens DKFZP564C186 protein (DKFZP564C186), mRNA.
11
NM_032129 TGGAGAGCAGCCCAGATGCCCCTGACCACACTTCGGAAACATCACACTCGCCCCTCTATG
1
898759
898818
AL136730 , BC101386 , BC101387 , BX648399 , NM_032129
PLEKHN1
Homo sapiens hypothetical protein DKFZp434H2010 (DKFZP434H2010), mRNA.
12
NM_032722 CTGGCAAGGGCTCCAAGGCCCATCACTCTTGATCCTCAAAGGACTGTGGCCAAGGCCTCT
1
900820
900879
AK123855 , BC006300 , BX648399
AK123855 / BC006300
Homo sapiens hypothetical protein MGC13275 (MGC13275), mRNA.
13
NM_021170 CGCCGTTCTGGGCAAGTACCGCGCCGGCTTCCACGAGTGTCTGGCGGAGGTGAACCGCTT
1
924597
924656
AB048791 , BC012351 , BX648399 , NM_021170
HES4
Homo sapiens bHLH factor Hes4 (Hes4), mRNA.
14
NM_005101 ACGAATTCCAGGTGTCCCTGAGCAGCTCCATGTCGGTGTCAGAGCTGAAGGCGCAGATCA
1
939261
939320
AY168648 , BC009507 , BT007297 , M13755 , NM_005101
G1P2
Homo sapiens interferon, alpha-inducible protein (clone IFI-15K) (G1P2), mRNA.
15
AF016903 AGCCGTGCTGCAGACAGACCTAGTGCTGAGGGATGGACAGGCGAGGTGGCAGCGTGGAGG
1
980354
980413
AB191264 , AF016903 , AK021586 , AK125197 , AK128761 , BC004220 , BC007649 , BC034009 , BC063620 , NM_198576
AGRN
Homo sapiens agrin precursor mRNA, partial cds.
16
BC033949 AGAAGCTCTTCCTATCCAGAGGTCAGCGTGGGGACTTCCTTGCCAGGCCCAGTGAGAGCA
1
988357
988416
BC033949
NA
Homo sapiens, clone IMAGE:5286066, mRNA.
17
NM_017891 AGCCATCTCGTTTATCGGACCAGGAGCAGGCATCCATGAGACCTCAGAGCTTCAGATCGA
1
1007882
1007941
AK000591 , AK024796 , AK054793 , AK057368 , AK124054 , AK128271 , AK128434 , AY358490 , BC008788 , BC028173 , CR594538 , CR603743 , CR613599 , CR619768 , CR626098 , NM_017891
C1orf159
Homo sapiens hypothetical protein FLJ20584 (FLJ20584), mRNA.
18
BC028014 CTCCCGCCCTAACGGTCGCTGAAGTGTCCTGCTCTCATACGAACTTGTGTCTAAAACTGT
1
1068378
1068437
BC028014
LOC254099
Homo sapiens, clone IMAGE:5216367, mRNA.
19
NM_153254 ACTACACGCTGAAGTGGTGTGAGGTCAAGAGCCGAGACAGCTACGGCAGCTTCCGGGAAG
1
1105785
1105844
AK093438 , AK124125 , AX748126 , BC027945 , NM_153254
TTLL10
Homo sapiens hypothetical protein FLJ36119 (FLJ36119), mRNA.
20
NM_004195 AGTGCTGTTCCGAGTGGGACTGCATGTGTGTCCAGCCTGAATTCCACTGCGGAGACCCTT
1
1130670
1130729
AF117297 , AF125304 , AF241229 , AX781595 , AX781597 , AX781599 , AX781601 , AX794366 , AY358877 , BT019531 , BT019532 , NM_004195 , NM_148901 , NM_148902
TNFRSF18
Homo sapiens tumor necrosis factor receptor superfamily, member 18 (TNFRSF18), transcript variant 1, mRNA.
27801 6406 Kbytes .Supplementary data files not provided
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