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Platform GPL5741 Query DataSets for GPL5741
Status Public on Nov 02, 2007
Title U. Toronto Saccharomyces cerevisiae y6.4k2.gal cDNA array
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Saccharomyces cerevisiae
Manufacturer University of Toronto
Manufacture protocol Double-spotted array containing 6,240 yeast ORFS (plus control spots totalling 6.4k)
 
 
Contributor(s) Komili S, Farny NG, Roth FP, Silver PA
Submission date Aug 13, 2007
Last update date Nov 02, 2007
Contact name Suzanne Komili
Organization name Harvard University
Street address 44 Binney St.
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Samples (4) GSM217790, GSM217792, GSM217793, GSM217796
Series (1)
GSE8765 Transcriptional profiling of Loc1 knockout

Data table header descriptions
ID
Primary Sequence Name
Sequence Name(s)
Sequence Description
Sequence Source
ORF Locus tag
SPOT_ID spot identifier; controls

Data table
ID Primary Sequence Name Sequence Name(s) Sequence Description Sequence Source ORF SPOT_ID
3X SSC SGD --CONTROL_3X SSC
Arab Arab Arab SGD --CONTROL_Arab
Umat No data for well 17H06 No data for well 17H06 SGD --CONTROL_Umat
YAL001C TFC3 TFC3,FUN24,tsv115 transcription factor tau (TFIIIC) subunit 138; Null mutant is inviable SGD YAL001C
YAL002W VPS8 VPS8,FUN15,VPT8 involved in vacuolar protein sorting; required for localization and trafficking of the CPY sorting receptor; Vps8p is a membrane-associated hydrophilic protein which contains a C-terminal cysteine-rich region that conforms to the H2 variant of the RING finger Zn2+ binding motif.; Null mutant is viable, missorts and secretes vacuolar hydrolases, overexpression of VPS21 partially suppresses vps8 null SGD YAL002W
YAL003W EFB1 EFB1,TEF5 Translation elongation factor EF-1beta, GDP/GTP exchange factor for Tef1p/Tef2p; Null mutant is inviable SGD YAL003W
YAL004W YAL004W YAL004W SGD YAL004W
YAL005C ssa1 ssa1,YG100 Stress-seventy subfamily A; Heat shock protein of HSP70 family, cytoplasmic; Null mutant is viable, temperature sensitive; ssa1 ssa2 ssa4 strains are inviable; an intact copy of SSA3 regulated by the constitutive SSA2 promoter is capable of rescuing the inviability of an ssa1 ssa2 ssa4 strain SGD YAL005C
YAL007C ERP2 ERP2 Emp24p/Erv25p Related Protein 2; p24 protein involved in membrane trafficking; null mutant is viable; delayed transport of Gas1p SGD YAL007C
YAL008W FUN14 FUN14 Mitochondrial protein of unknown function ; SGD YAL008W
YAL009W spo7 spo7 dispensable for mitosis, but required for a normal mutation rate, required for premeiotic DNA synthesis, recombination, meiosis I, meiosis II, glycogen degradation and spores; Null mutant is viable, sporulation defective SGD YAL009W
YAL010C mdm10 mdm10,FUN37 Mitochondrial outer membrane protein involved in mitochondrial morphology and inheritance; Null mutant has short actin cables. Point mutants exhibit giant, spherical mitochondria and are defective for mitochondrial inheritance. SGD YAL010C
YAL011W SWC3 SWC3,SWC1 possible mitochondrial transit peptide SGD YAL011W
YAL012W cys3 cys3,CYI1,FUN35,STR1 cystathionine gamma-lyase; Null mutant is viable, cysteine auxotroph SGD YAL012W
YAL013W DEP1 DEP1,FUN54 Regulator of phospholipid metabolism; Null mutant is viable SGD YAL013W
YAL014C SYN8 SYN8,SLT2|UIP2 Endosomal SNARE related to mammalian syntaxin 8 ; SGD YAL014C
YAL015C NTG1 NTG1,FUN33 Endonuclase III like glycosylase involved in DNA repair; DNA glycosylase; Null mutant is viable but is sensitive to H202 and menadione SGD YAL015C
YAL016W tpd3 tpd3,FUN32 protein phosphatase 2A regulatory subunit A; Null mutant is viable, defective in cytokinesis at reduced temperatures, defective in transcription by RNA polymerase III at elevated temperatures; nocodazole sensitive and exhibits phenotypes of previously identified kinetochore/spindle checkpoint mutants SGD YAL016W
YAL017W FUN31 FUN31 Contains serine/threonine protein kinase domain and shows homology with the SNF1 serine/threonine protein kinase; Null mutant is viable SGD YAL017W
YAL018C YAL018C YAL018C 3 transmembrane domains SGD YAL018C

Total number of rows: 6221

Table truncated, full table size 919 Kbytes.




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Supplementary file Size Download File type/resource
GPL5741_complete_list_of_features.txt.gz 99.1 Kb (ftp)(http) TXT

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