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Platform GPL5762 Query DataSets for GPL5762
Status Public on Aug 24, 2007
Title Meyerowitz Lab Arabidopsis Operon Array Version 2
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Arabidopsis thaliana
Manufacturer Meyerowitz laboratory at the California Institute of Technology
Manufacture protocol The oligonucleotides of the Arabidopsis Genome Oligo Set (Operon) were provided in 384-well plates. The dried DNA was resuspended in 15 ul of printing buffer (150 mM Na-phosphate pH 8.5) per well, resulting in an estimated DNA concentration of 40 uM. DNA was spotted onto poly-lysine coated glass slides with a MicroGrid II spotter (Biorobotics) using Microspot 10K quill pins (Biorobotics). After printing, the slides were processed and blocked following standard protocols.
Support glass
Coating polysine
 
Description This microarray is based on the Arabidopsis Genome Oligo Set Version 1.0 (Operon, Alameda, CA). This set consists of 26,090 oligonucleotides that correspond to 22,361 annotated Arabidopsis genes (The Arabidopsis Information Resource (TAIR) genome annotation version 6).
 
Web link http://www.its.caltech.edu/~plantlab/
Contributor(s) Alves-Ferreira M, Wellmer F, Kumar V, Riechmann JL, Meyerowitz EM
Submission date Aug 21, 2007
Last update date Jun 14, 2013
Contact name Jose Luis Riechmann
E-mail(s) joseluis.riechmann@cragenomica.es
Organization name Center for Research in Agricultural Genomics
Street address Campus UAB - Edifici CRAG
City Bellaterra
State/province Barcelona
ZIP/Postal code 08193
Country Spain
 
Samples (81) GSM224634, GSM224635, GSM224636, GSM224637, GSM224638, GSM224639 
Series (4)
GSE8864 Global expression profiling applied to the analysis of Arabidopsis stamen development
GSE12043 Decapped mRNAs during Arabidopsis Early Flower Development
GSE19863 Arabidopsis regeneration from multiple tissues occurs via a root development pathway

Data table header descriptions
ID
CLONE ID
Gene_Symbol Gene symbol of gene represented by an array element (according to TAIR)
Gene_Description Description of gene or gene product represented by an array element
ORF GenBank GENE
SPOT_ID spot identifier

Data table
ID CLONE ID Gene_Symbol Gene_Description ORF SPOT_ID
A000001_01 At1g58360_1 AAP1 Organic Solute CotransportersAmino acid permease family amino acid permease I (AAP1), identical to amino acid permease I GI:22641 from (Arabidopsis thaliana) F19C14.3, F19C14_3, NAT2, NEUTRAL AMINO ACID TRANSPORTER 2 At1g58360
A000002_01 At1g26110_1 expressed protein F14G11.8, F14G11_8 At1g26110
A000003_01 At4g04780_1 expressed protein, very low similarity to SP:Q13503 RNA polymerase II holoenzyme component SRB7 (RNAPII complex component SRB7) {Homo sapiens} T4B21.8, T4B21_8 At4g04780
A000004_01 At1g04140_1 transducin family protein / WD-40 repeat family protein, contains 4 WD-40 repeats (PF00400); similar to neural cell adhesion molecule 2, large isoform precursor gb:M76710 from Xenopus laevis, and beta transducin from S. cerevisiae gb:Q05946. ESTs gb:N65081 gb:Z30910, gb:Z34190, gb:Z34611, gb:R30101, gb:H36304, and gb:N65606 come from F20D22.9, F20D22_9 At1g04140
A000005_01 At1g13270_1 MAP1C metallopeptidase M24 family protein, similar to SP:Q01662 Methionine aminopeptidase 1 precursor (EC 3.4.11.18) {Saccharomyces cerevisiae}; contains Pfam profile PF00557: metallopeptidase family M24 MAP1B, METHIONINE AMINOPEPTIDASE 1B At1g13270
A000006_01 At1g09640_1 Protein synthesis factorsEF1Bgamma - elongation factor 1BgammaAteEF1B-G1 elongation factor 1B-gamma, putative / eEF-1B gamma, putative, Similar to elongation factor 1-gamma (gb:EF1G_XENLA). ESTs gb:T20564,gb:T45940,gb:T04527 come from this gene F21M12.3, F21M12_3 At1g09640
A000007_01 At1g33560_1 ADR1 disease resistance protein (CC-NBS-LRR class), putative, domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein. ACTIVATED DISEASE RESISTANCE 1, F10C21.19 At1g33560
A000008_01 At1g17615_1 disease resistance protein (TIR-NBS class), putative, domain signature TIR exists, suggestive of a disease resistance protein. F1L3.31, F1L3_31 At1g17615
A000009_01 At1g67855_1 expressed protein, hypothetical protein F12A21.1, F12A21_1 At1g67855
A000010_01 At1g02450_1 NPR1/NIM1-interacting protein 1 (NIMIN-1), identical to NIMIN-1 protein (Arabidopsis thaliana) gi:12057154:emb:CAC19844; identical to cDNA NIMIN-1 protein (nimin-1 gene)GI:12057153 T6A9.23 At1g02450
A000011_01 At1g17665_1 expressed protein None At1g17665
A000012_01 At1g54610_1 protein kinase family protein, contains Pfam domain, PF00069: Protein kinase domain T22H22.5, T22H22_5 At1g54610
A000013_01 At1g33980_1 Smg-4/UPF3 family protein, contains Pfam PF03467: Smg-4/UPF3 family; similar to hUPF3B (GI:12232324) (Homo sapiens) F12G12.20, F12G12_20 At1g33980
A000014_01 At1g33640_1 hypothetical protein, contains similarity to epidermal growth factor receptor-like protein GB:AAB31972 GI:9256501 from (Xiphophorus maculatus) T1E4.1 At1g33640
A000015_01 At1g17560_1 HLL ribosomal protein L14 family protein, similar to GB:Z98756 from (Mycobacterium leprae) F1L3.27, F1L3_27, HUELLENLOS At1g17560
A000016_01 At1g09700_1 HYL1 double-stranded RNA-binding domain (DsRBD)-containing protein, contains Pfam profile PF00035: Double-stranded RNA binding motif; supporting cDNA gi:12247456:gb:AF276440.1:AF276440 F21M12.9, F21M12_9, HYPONASTIC LEAVES 1 At1g09700
A000017_01 At1g80040_1 expressed protein F18B13.13, F18B13_13 At1g80040
A000018_01 At1g12170_1 F-box family protein, contains F-box domain Pfam:PF00646 T28K15.9, T28K15_9 At1g12170
A000019_01 At1g12150_1 expressed protein, contains Pfam profile PF05701: Plant protein of unknown function (DUF827); expression supported by MPSS T28K15.11, T28K15_11 At1g12150
A000020_01 At1g60220_1 similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:At1g10570.2); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:At1g10570.1); similar to OSJNBb0021A09.14 [Oryza sativa (japonica cultivar-group)] (GB:NP_916015.1); contains InterPro domain SUMO/Sentrin/Ubl1 specific protease (InterPro:IPR003653) T13D8.11, T13D8_11 At1g60220

Total number of rows: 26540

Table truncated, full table size 5052 Kbytes.






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