GEO help: Mouse over screen elements for information.
Status
Public on Sep 07, 2007
Title
Nimblegen Custom HOX array
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
Nimblegen
Manufacture protocol
http://nimblegen.com
Description
Spotted 50 mer oligos 400,000 features
Submission date
Aug 29, 2007
Last update date
Sep 14, 2007
Contact name
John Louis Rinn
E-mail(s)
jrinn@stanford.edu Phone
650 5752491
Fax
650 5752491
Organization name
Stanford University
Department
Dermatology
Lab
Chang
Street address
2155 CCSR
City
Stanford
State/province
CA
ZIP/Postal code
94305
Country
USA
Samples (32)
GSM225641 , GSM225642 , GSM253735 , GSM253736 , GSM253737 , GSM253738
GSM253739 ,
GSM253740 ,
GSM253741 ,
GSM253742 ,
GSM297892 ,
GSM297893 ,
GSM556161 ,
GSM556162 ,
GSM556163 ,
GSM556164 ,
GSM556165 ,
GSM556166 ,
GSM652444 ,
GSM652445 ,
GSM652446 ,
GSM652447 ,
GSM652448 ,
GSM652449 ,
GSM652450 ,
GSM652451 ,
GSM652452 ,
GSM652453 ,
GSM652454 ,
GSM652455 ,
GSM652456 ,
GSM652457 Series (5)
GSE8855 UTX_CHIP_FIBROBLASTS
GSE10042 Stable nucleosome positions in HOX clusters; human K562 and HeLa cells
GSE22343 ChIP-chip of siGFP- or siHOTAIR-treated foreskin fibroblasts with anti-H3K4me2, anti-LSD1 or anti-SUZ12 antibodies on HOX tiling array
GSE22345 Long noncoding RNA as modular scaffold of histone modification complexes
GSE26540 ChIP-chip of siGFP- or siHOTTIP-treated foreskin fibroblasts with anti-H3K4me3, anti-H3K27me3, anti-H3K4me2, anti-histone, anti-MLL1, and anti-WDR5 antibodies on HOX tiling array
Data table header descriptions ID Chromosome chromosome number
RANGE_START Start Coordinate of Peak
RANGE_STOP Stop Coordinate of Peak
RANGE_STRAND pos or neg strand
Probe_annotation RANGE_GB NCBI BUILD 35 (HG17) ACCESSION
Data table ID Chromosome RANGE_START RANGE_STOP RANGE_STRAND Probe_annotation RANGE_GB BAX00P000001308
chr19
54146253
54146302
+
seq_id=BAX;probe_id=BAX00P000001308;count=1
NC_000019.8 BAX00P000001333
chr19
54146278
54146327
+
seq_id=BAX;probe_id=BAX00P000001333;count=1
NC_000019.8 BAX00P000001358
chr19
54146303
54146352
+
seq_id=BAX;probe_id=BAX00P000001358;count=1
NC_000019.8 BAX00P000002773
chr19
54147718
54147767
+
seq_id=BAX;probe_id=BAX00P000002773;count=1
NC_000019.8 BAX00P000002798
chr19
54147743
54147792
+
seq_id=BAX;probe_id=BAX00P000002798;count=1
NC_000019.8 BAX00P000002823
chr19
54147768
54147817
+
seq_id=BAX;probe_id=BAX00P000002823;count=1
NC_000019.8 BAX00P000002848
chr19
54147793
54147842
+
seq_id=BAX;probe_id=BAX00P000002848;count=1
NC_000019.8 BAX00P000002873
chr19
54147818
54147867
+
seq_id=BAX;probe_id=BAX00P000002873;count=1
NC_000019.8 BAX00P000002898
chr19
54147843
54147892
+
seq_id=BAX;probe_id=BAX00P000002898;count=1
NC_000019.8 BAX00P000002923
chr19
54147868
54147917
+
seq_id=BAX;probe_id=BAX00P000002923;count=1
NC_000019.8 BAX00P000002948
chr19
54147893
54147942
+
seq_id=BAX;probe_id=BAX00P000002948;count=1
NC_000019.8 BAX00P000002973
chr19
54147918
54147967
+
seq_id=BAX;probe_id=BAX00P000002973;count=1
NC_000019.8 BAX00P000002998
chr19
54147943
54147992
+
seq_id=BAX;probe_id=BAX00P000002998;count=1
NC_000019.8 BAX00P000003023
chr19
54147968
54148017
+
seq_id=BAX;probe_id=BAX00P000003023;count=1
NC_000019.8 BAX00P000003392
chr19
54148337
54148386
+
seq_id=BAX;probe_id=BAX00P000003392;count=1
NC_000019.8 BAX00P000003417
chr19
54148362
54148411
+
seq_id=BAX;probe_id=BAX00P000003417;count=1
NC_000019.8 BAX00P000003442
chr19
54148387
54148436
+
seq_id=BAX;probe_id=BAX00P000003442;count=1
NC_000019.8 BAX00P000003467
chr19
54148412
54148461
+
seq_id=BAX;probe_id=BAX00P000003467;count=1
NC_000019.8 BAX00P000003492
chr19
54148437
54148486
+
seq_id=BAX;probe_id=BAX00P000003492;count=1
NC_000019.8 BAX00P000003517
chr19
54148462
54148511
+
seq_id=BAX;probe_id=BAX00P000003517;count=1
NC_000019.8
301026 31493 Kbytes .Supplementary file Size Download File type/resource GPL5790.ndf.gz
13.5 Mb
(ftp) (http) NDF
Less...
More...