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Platform GPL5898 Query DataSets for GPL5898
Status Public on Dec 01, 2007
Title JCVI PFGRC Streptococcus pyogenes 21K v1 array designed primarily based on strain MGAS10270
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Streptococcus pyogenes
Manufacturer JCVI PFGRC
Manufacture protocol QSY, with arrayer GENETIX, machine cycles 0, pen id 0, pen cycles 0, operator 0, humidity control 0, humidity set point0.000
Coating aminosilane
 
Description This set includes 9395 oligonucleotides, has 21168 spots distributed in 48 blocks.
 
Web link http://pfgrc.jcvi.org/descriptionPages.shtml
Submission date Sep 18, 2007
Last update date Dec 12, 2007
Contact name PFGRC JCVI
E-mail(s) jli@jcvi.org
Phone 3017957840
Organization name J. Craig Venter Institute
Department PFGRC
Street address 9704 Medical Center Drive
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 

Data table header descriptions
ID Unique identification of each oligo
SEQUENCE Oligo sequence
GC% GC content of the sequence
Internal Repeat Score Internal repeat score
Self-Annealing Score Self-anneal score
Primary Strain The strain of primary target
Primary Target Locus primarily hit by the oligo
Common Name of Primary Target Common name of primary target
Gene Symbol Gene symbol
Strain SF370 Target map of strain SF370
Strain MGAS8232 Target map of strain MGAS8232
Strain MGAS315 Target map of strain MGAS315
Strain SSI-1 Target map of strain SSI-1
Strain MGAS10394 Target map of strain MGAS10394
Strain 71-724 Target map of strain 71-724
Strain MGAS6180 Target map of strain MGAS6180
Strain MGAS5005 Target map of strain MGAS5005
Strain MGAS9429 Target map of strain MGAS9429
Strain MGAS10270 Target map of strain MGAS10270
Strain MGAS2096 Target map of strain MGAS2096
Strain MGAS10750 Target map of strain MGAS10750
ORF primary target linkin Entrez Gene
SPOT_ID

Data table
ID SEQUENCE GC% Internal Repeat Score Self-Annealing Score Primary Strain Primary Target Common Name of Primary Target Gene Symbol Strain SF370 Strain MGAS8232 Strain MGAS315 Strain SSI-1 Strain MGAS10394 Strain 71-724 Strain MGAS6180 Strain MGAS5005 Strain MGAS9429 Strain MGAS10270 Strain MGAS2096 Strain MGAS10750 ORF SPOT_ID
QSY00001_A_1 AATCCAACTTACCTTATTGAGTCTTTAAAAGCTATTAAAAGTGAAACAGTAAAAATTCATTTCTTATCAC 25.71 32 107 MGAS10270 MGAS10270_Spy0002 "DNA polymerase III, beta chain" dnaN SPy_0003::70::100.0::7.9E-11::+ spyM18_0002::70::100.0::7.9E-11::+ SpyM3_0002::70::100.0::7.9E-11::+ SPs0002::70::100.0::7.9E-11::+ M6_Spy0002::70::100.0::7.9E-11::+ M28_Spy0002::70::100.0::7.9E-11::+ M5005_Spy_0002::70::100.0::7.9E-11::+ MGAS9429_Spy0002::70::100.0::7.9E-11::+ MGAS10270_Spy0002::70::100.0::7.9E-11::+ MGAS2096_Spy0002::70::100.0::7.9E-11::+ MGAS10750_Spy0002::70::100.0::7.9E-11::+ MGAS10270_Spy0002
QSY00001_A_10 ATCTTAATTAGTCTAAAAGATAGTATCGATAGTGGTGATATAGATCTGATTACTAGAGTTTATGACACGG 31.43 31 110 MGAS6180 M28_Spy0199 sensory transduction protein kinase fasC SPy_0244::70::98.57143::2.3E-10::+ spyM18_0226::70::98.57143::2.3E-10::+ SpyM3_0173::70::97.14286::1.7E-10::+ M6_Spy0236::70::98.57143::2.3E-10::+ M28_Spy0199::70::100.0::8.9E-11::+ M5005_Spy_0205::70::98.57143::2.3E-10::+ MGAS9429_Spy0206::70::97.14286::6.0E-10::+ MGAS10270_Spy0205::70::97.14286::6.0E-10::+ MGAS2096_Spy0220::70::97.14286::6.0E-10::+ MGAS10750_Spy0200::70::97.14286::6.0E-10::+ M28_Spy0199
QSY00001_A_11 CATTAATCAAGGAAGAACTAATCAACGGTATCGGCCACATCACAGGTGGTGGCTTTATCGAGAATGTTCC 44.29 29 104 MGAS6180 M28_Spy0025 phosphoribosylaminoimidazole synthetase purM SPy_0027::70::94.28571::3.3E-9::+ spyM18_0028::70::95.71428::1.3E-9::+ SpyM3_0022::70::97.14286::4.8E-10::+ SPs0023::70::97.14286::4.8E-10::+ M6_Spy0074::70::97.14286::4.8E-10::+ M28_Spy0025::70::100.0::6.9E-11::+ M5005_Spy_0025::70::94.28571::3.3E-9::+ MGAS9429_Spy0025::70::98.57143::1.9E-10::+ MGAS10270_Spy0026::70::98.57143::1.8E-10::+ MGAS2096_Spy0026::70::98.57143::1.8E-10::+ MGAS10750_Spy0025::70::95.71428::1.3E-9::+ M28_Spy0025
QSY00001_A_12 AAGCAGAAGATACCAAAGTGGTTCCTCTCATGTCTGAAGATAGTCCAGCGCAAACCCTTTCTAATCTTGC 44.29 29 108 MGAS6180 M28_Spy0203 Jag protein SPy_0248::70::98.57143::1.5E-10::+ spyM18_0230::70::97.14286::4.1E-10::+ SpyM3_0177::70::97.14286::4.1E-10::+ SPs0182::70::97.14286::4.1E-10::+ M6_Spy0240::70::97.14286::4.1E-10::+ M28_Spy0203::70::100.0::5.7E-11::+ M5005_Spy_0209::70::98.57143::1.5E-10::+ MGAS9429_Spy0210::70::98.57143::1.5E-10::+ MGAS10270_Spy0209::70::97.14286::4.1E-10::+ MGAS10750_Spy0204::70::97.14286::4.1E-10::+ M28_Spy0203
QSY00001_A_13 ATTTTCGACAAGTCGAAACGCCCCTTTGTATCTTAATTATGAAAACTCCAATTATTTCTATTATCATGGG 32.86 31 93 MGAS6180 M28_Spy0030 phosphoribosylaminoimidazole carboxylase catalytic subunit purE spyM18_0033::70::97.14286::1.2E-10::+ SpyM3_0027::68::98.52941::1.3E-10::+ SPs0028::68::98.52941::1.3E-10::+ M6_Spy0079::70::97.14286::1.2E-10::+ M28_Spy0030::70::100.0::1.8E-11::+ M5005_Spy_0030::70::98.57143::4.7E-11::+ M28_Spy0030
QSY00001_A_14 ATTTATCCAGTTTATCGCTGATGATAAAGAATGGGGACCTAAAAATGTTGTTCGTACAGGTGCTTTCCCT 38.57 29 76 MGAS6180 M28_Spy0207 N-acetylneuraminate-binding protein SPy_0252::70::98.57143::2.4E-10::+ spyM18_0234::70::98.57143::2.4E-10::+ M6_Spy0244::70::98.57143::2.4E-10::+ M28_Spy0207::70::100.0::9.1E-11::+ M5005_Spy_0213::70::98.57143::2.4E-10::+ MGAS9429_Spy0214::70::98.57143::2.4E-10::+ MGAS10270_Spy0212::70::98.57143::2.4E-10::+ MGAS2096_Spy0231::70::98.57143::1.9E-10::+ MGAS10750_Spy0207::70::97.14286::6.2E-10::+ M28_Spy0207
QSY00001_A_15 GAAACATAACCGCAAAATGGGACATGTGACGGTGTTTAGTGATTTGCCTGATGAGGTGGAGGAGTTTTAG 44.29 31 71 MGAS6180 M28_Spy0031 phosphoribosylaminoimidazole carboxylase purK M28_Spy0031::70::100.0::7.6E-11::+ M28_Spy0031
QSY00001_A_16 CCAATTATGCTAGGATGTTTCAAGATCCTATCTTTATGAAATCTCTTATCAATACGTTGATTATCGTTAT 30.0 31 103 MGAS6180 M28_Spy0208 N-acetylneuraminate transport system permease protein M28_Spy0208::70::100.0::6.5E-11::+ M28_Spy0208
QSY00001_A_17 TATTAGAAATTGATTGGGAAAACGTTTCTGATGACATAGAGCCCTTAAAGATACATCGTAACTTTTATGA 31.43 29 92 MGAS6180 M28_Spy0032 hypothetical protein M28_Spy0032::70::100.0::9.8E-11::+ M28_Spy0032
QSY00001_A_18 TTCTGACTACTGTTATTCTATGCATCTTGACCATTTTGTTTATTTTCCCATTTTATTGGATTATGACAGG 31.43 33 55 MGAS2096 MGAS2096_Spy0233 N-acetylneuraminate transport system permease protein SpyM3_0183::70::100.0::4.5E-11::+ SPs0188::70::100.0::4.5E-11::+ M28_Spy0209::70::100.0::4.5E-11::+ MGAS9429_Spy0216::70::100.0::4.5E-11::+ MGAS2096_Spy0233::70::100.0::4.5E-11::+ MGAS2096_Spy0233
QSY00001_A_19 AACTTGATGAACTATTTAATCCGATTTATTACACAAAACGTGTTGATGATATTTTTAAGCGTTTAGGGAT 28.57 32 89 MGAS6180 M28_Spy0033 adenylosuccinate lyase purB SPy_0036::70::98.57143::2.3E-10::+ spyM18_0037::70::98.57143::2.3E-10::+ SpyM3_0030::70::98.57143::2.3E-10::+ SPs0031::70::98.57143::2.3E-10::+ M6_Spy0082::70::97.14286::6.1E-10::+ M28_Spy0033::70::100.0::8.9E-11::+ M5005_Spy_0033::70::98.57143::2.3E-10::+ MGAS9429_Spy0034::70::98.57143::2.3E-10::+ MGAS10270_Spy0034::70::98.57143::2.3E-10::+ MGAS2096_Spy0035::70::98.57143::2.3E-10::+ MGAS10750_Spy0035::70::97.14286::6.1E-10::+ M28_Spy0033
QSY00001_A_2 GGCTTTGATAAATTAACGATTGAAATCATGACAAACGGAACAATTATTCCTGAAGATGCTTTAGGTCTAT 32.86 31 97 MGAS10270 MGAS10270_Spy0073 DNA-directed RNA polymerase alpha chain rpoA SPy_0080::70::100.0::6.0E-11::+ spyM18_0079::70::100.0::6.0E-11::+ SpyM3_0066::70::100.0::6.0E-11::+ SPs0068::70::100.0::6.0E-11::+ M6_Spy0119::70::100.0::6.0E-11::+ M28_Spy0069::70::100.0::6.0E-11::+ M5005_Spy_0070::70::100.0::6.0E-11::+ MGAS9429_Spy0070::70::100.0::6.0E-11::+ MGAS10270_Spy0073::70::100.0::6.0E-11::+ MGAS2096_Spy0073::70::100.0::6.0E-11::+ MGAS10750_Spy0074::70::100.0::6.0E-11::+ MGAS10270_Spy0073
QSY00001_A_20 ATTTTGTGGCTTGTCTCTACTGGCCACTATGGGCATCAGTAGCCTAACTTACCTCTACTTGATTATCATG 42.86 31 76 MGAS6180 M28_Spy0210 hypothetical membrane spanning protein M28_Spy0210::70::100.0::1.7E-11::+ M28_Spy0210
QSY00001_A_21 TTATGTTATAATAGTCCTATGGCTAGAATTTTAGACAATGATGTAATGGGAAATGAGGAGTTTTCGGATC 32.86 30 92 MGAS2096 MGAS2096_Spy0037 Holliday junction DNA helicase ruvB ruvB spyM18_0039::70::98.57143::1.9E-10::+ M6_Spy0084::70::98.57143::1.9E-10::+ M28_Spy0035::70::100.0::7.3E-11::+ MGAS9429_Spy0036::70::100.0::7.3E-11::+ MGAS2096_Spy0037::70::100.0::7.3E-11::+ MGAS10750_Spy0037::70::98.57143::1.9E-10::+ MGAS2096_Spy0037
QSY00001_A_22 TTCAATATACTATTAATGAGACTATCGGTGTCCTTGTTTCTGCTCACGGCAATATGTATGGGGTTATTAA 35.71 29 97 MGAS6180 M28_Spy0211 N-acetylneuraminate lyase nanH SPy_0257::70::98.57143::1.5E-10::+ spyM18_0240::70::98.57143::1.5E-10::+ SpyM3_0185::70::98.57143::1.5E-10::+ SPs0190::70::98.57143::1.5E-10::+ M6_Spy0249::70::98.57143::1.5E-10::+ M28_Spy0211::70::100.0::5.7E-11::+ M5005_Spy_0217::70::98.57143::1.5E-10::+ MGAS9429_Spy0218::70::98.57143::1.5E-10::+ MGAS10270_Spy0217::70::98.57143::1.5E-10::+ MGAS2096_Spy0235::70::98.57143::1.5E-10::+ MGAS10750_Spy0212::70::98.57143::1.5E-10::+ M28_Spy0211
QSY00001_A_23 TTCAAAAACTAGTTGATAAAAATGCAAGATTTGATTTAGAGATTGCTAATCTCTTGACAGAAGATTTACA 27.14 32 100 MGAS10270 MGAS10270_Spy0006 Transcription-repair coupling factor trcF SPy_0008::70::100.0::1.4E-10::+ spyM18_0007::70::100.0::1.4E-10::+ SpyM3_0006::70::100.0::1.4E-10::+ SPs0006::70::100.0::1.4E-10::+ M6_Spy0006::70::100.0::1.4E-10::+ M28_Spy0006::70::100.0::1.4E-10::+ M5005_Spy_0006::70::100.0::1.4E-10::+ MGAS9429_Spy0006::70::100.0::1.4E-10::+ MGAS10270_Spy0006::70::100.0::1.4E-10::+ MGAS2096_Spy0006::70::100.0::1.4E-10::+ MGAS10750_Spy0006::70::100.0::1.4E-10::+ MGAS10270_Spy0006
QSY00001_A_24 ATTTAAAAGTCATGATTTTCGAAAATCAGCTAGTAATGGAAAAGGGTATCAACCCATGTTATTTGGAATA 30.0 32 111 MGAS10750 MGAS10750_Spy0098 ComG operon protein 6 comYD SPy_0106::70::100.0::2.6E-11::+ spyM18_0108::70::98.57143::6.5E-11::+ SpyM3_0083::70::98.57143::6.5E-11::+ SPs0084::70::98.57143::6.5E-11::+ M6_Spy0139::70::98.57143::6.5E-11::+ M28_Spy0089::70::100.0::2.6E-11::+ M5005_Spy_0091::70::100.0::2.6E-11::+ MGAS9429_Spy0092::70::98.57143::6.5E-11::+ MGAS10270_Spy0093::70::98.57143::6.5E-11::+ MGAS2096_Spy0094::70::98.57143::6.5E-11::+ MGAS10750_Spy0098::70::100.0::2.6E-11::+ MGAS10750_Spy0098
QSY00001_A_3 ATAATAACAAACAAATTGTCCTAACAAGTGACCGTACACCAGATCATCTCAATGATTTAGAAGATCGATT 32.86 30 86 MGAS6180 M28_Spy0001 chromosomal replication initiation protein dnaA SPy_0002::70::98.57143::2.4E-10::+ spyM18_0001::70::98.57143::2.4E-10::+ SpyM3_0001::70::98.57143::2.4E-10::+ SPs0001::70::98.57143::2.4E-10::+ M6_Spy0001::70::98.57143::2.4E-10::+ M28_Spy0001::70::100.0::9.3E-11::+ M5005_Spy_0001::70::98.57143::2.4E-10::+ MGAS9429_Spy0001::70::98.57143::2.4E-10::+ MGAS10270_Spy0001::70::98.57143::2.4E-10::+ MGAS2096_Spy0001::70::98.57143::2.4E-10::+ MGAS10750_Spy0001::70::98.57143::2.4E-10::+ M28_Spy0001
QSY00001_A_4 TATTTTGAACATTTTATGGCTGCCAATCAGGCTTATGTGGCCTTGCATGGGACAGCTCATCTGCCCTTAA 44.29 30 88 MGAS315 SpyM3_0168 hypothetical protein SPy_0237::70::98.57143::5.7E-11::+ spyM18_0221::70::98.57143::5.7E-11::+ SpyM3_0168::70::100.0::2.2E-11::+ SPs0175::70::100.0::2.2E-11::+ M6_Spy0232::70::98.57143::5.7E-11::+ M28_Spy0195::70::100.0::2.2E-11::+ M5005_Spy_0201::70::98.57143::5.7E-11::+ MGAS9429_Spy0202::70::98.57143::5.7E-11::+ MGAS10270_Spy0200::70::98.57143::5.7E-11::+ MGAS2096_Spy0214::70::98.57143::7.0E-11::+ MGAS10750_Spy0196::70::97.14286::1.4E-10::+ SpyM3_0168
QSY00001_A_5 GATGATGGATAATATTGTAAAAAAAATAGAAGCATTTCTTGCTTTTTCTGATAAAAAATTAGCAGAGCTG 27.14 34 111 MGAS6180 M28_Spy0009 hypothetical protein SPs0009::70::98.57143::2.3E-10::+ M6_Spy0009::70::97.14286::5.8E-10::+ M28_Spy0009::70::100.0::8.9E-11::+ M5005_Spy_0009::70::98.57143::2.3E-10::+ MGAS9429_Spy0009::70::98.57143::2.3E-10::+ MGAS10270_Spy0009::70::98.57143::2.3E-10::+ MGAS2096_Spy0009::70::98.57143::2.3E-10::+ MGAS10750_Spy0009::70::98.57143::2.3E-10::+ M28_Spy0009

Total number of rows: 9945

Table truncated, full table size 4677 Kbytes.




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Supplementary data files not provided
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