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Platform GPL5987 Query DataSets for GPL5987
Status Public on Nov 01, 2007
Title Nimblegen Hg18 Promoter (2 of 2)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Nimblegen Systems, INC
Manufacture protocol as described on Nimblegen website
 
Description Promoter Tiling Array
 
Submission date Oct 10, 2007
Last update date Nov 01, 2007
Contact name Kimberly Rose Blahnik
E-mail(s) krblahnik@ucdavis.edu
Organization name University of California Davis
Department Genome and Biomedical Sciences
Lab Peggy Farnham
Street address GBSF 1 Shields Ave
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
 
Samples (9) GSM239642, GSM239643, GSM239644, GSM239646, GSM239648, GSM239649 
Series (2)
GSE8667 Genome-wide Analysis of KAP1 Binding Suggests Auto-regulation of KRAB-ZNFs
GSE10504 Using ChIP-chip technology to reveal common principles of transcriptional repression in normal and cancer cells

Data table header descriptions
ID
GENE_SYMBOL GenBank annotated Gene Symbol
GENE_ID GenBank annotated Gene ID
GENBANK_ACC GenBank chromosome identifier (hg18)
NG_PROMOTER NimbleGen internal promoter name within this array
CHROMOSOME chromsome number
RANGE_GB ACCESSION.VERSION
SPOT_ID spot identifier
RANGE_STRAND always plus
RANGE_START startpoint in genbank chromosome (relative to the RANGE_GB accession)
RANGE_END endpoint in genbank chromosome (relative to the RANGE_GB accession)

Data table
ID GENE_SYMBOL GENE_ID GENBANK_ACC NG_PROMOTER CHROMOSOME RANGE_GB SPOT_ID RANGE_STRAND RANGE_START RANGE_END
CHR10:100017247-100021497_CHR10P100017247 LOXL4 84171 NM_032211 NA CHR10 NC_000010.9 + 100017247 100017296
CHR10:100017247-100021497_CHR10P100017347 LOXL4 84171 NM_032211 NA CHR10 NC_000010.9 + 100017347 100017396
CHR10:100017247-100021497_CHR10P100017447 LOXL4 84171 NM_032211 NA CHR10 NC_000010.9 + 100017447 100017496
CHR10:100017247-100021497_CHR10P100017547 LOXL4 84171 NM_032211 NA CHR10 NC_000010.9 + 100017547 100017596
CHR10:100017247-100021497_CHR10P100017647 LOXL4 84171 NM_032211 NA CHR10 NC_000010.9 + 100017647 100017696
CHR10:100017247-100021497_CHR10P100017747 LOXL4 84171 NM_032211 NA CHR10 NC_000010.9 + 100017747 100017796
CHR10:100017247-100021497_CHR10P100017847 LOXL4 84171 NM_032211 NA CHR10 NC_000010.9 + 100017847 100017896
CHR10:100017247-100021497_CHR10P100017947 LOXL4 84171 NM_032211 NA CHR10 NC_000010.9 + 100017947 100017996
CHR10:100017247-100021497_CHR10P100018047 LOXL4 84171 NM_032211 NA CHR10 NC_000010.9 + 100018047 100018096
CHR10:100017247-100021497_CHR10P100018155 LOXL4 84171 NM_032211 NA CHR10 NC_000010.9 + 100018155 100018204
CHR10:100017247-100021497_CHR10P100018255 LOXL4 84171 NM_032211 NA CHR10 NC_000010.9 + 100018255 100018304
CHR10:100017247-100021497_CHR10P100018355 LOXL4 84171 NM_032211 NA CHR10 NC_000010.9 + 100018355 100018404
CHR10:100017247-100021497_CHR10P100018455 LOXL4 84171 NM_032211 NA CHR10 NC_000010.9 + 100018455 100018504
CHR10:100017247-100021497_CHR10P100018555 LOXL4 84171 NM_032211 NA CHR10 NC_000010.9 + 100018555 100018604
CHR10:100017247-100021497_CHR10P100018655 LOXL4 84171 NM_032211 NA CHR10 NC_000010.9 + 100018655 100018704
CHR10:100017247-100021497_CHR10P100018755 LOXL4 84171 NM_032211 NA CHR10 NC_000010.9 + 100018755 100018804
CHR10:100017247-100021497_CHR10P100018955 LOXL4 84171 NM_032211 NA CHR10 NC_000010.9 + 100018955 100019004
CHR10:100017247-100021497_CHR10P100019055 LOXL4 84171 NM_032211 NA CHR10 NC_000010.9 + 100019055 100019104
CHR10:100017247-100021497_CHR10P100019155 LOXL4 84171 NM_032211 NA CHR10 NC_000010.9 + 100019155 100019204
CHR10:100017247-100021497_CHR10P100019355 LOXL4 84171 NM_032211 NA CHR10 NC_000010.9 + 100019355 100019404

Total number of rows: 378961

Table truncated, full table size 38306 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
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