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Platform GPL6032 Query DataSets for GPL6032
Status Public on Oct 27, 2007
Title PICME Poplar 28K Series 3
Technology type spotted DNA/cDNA
Distribution custom-commercial
Organisms Populus trichocarpa x Populus deltoides; Populus euphratica; Populus tremula x Populus alba
Manufacturer Austrian Research Centers GmbH - ARC, PICME
Manufacture protocol Spottingbuffer: 3xSSC+ 1,5MBetain
Spottingplate setting: Biozym 10µl
Arrayer Hardware: GeneMachines Omnigrid II
Arrayer Software: OmniGrid Gridder 2.2.13
Humidity: 40%
Dipping time in sec: 1
Support glass
Coating aminosilane
 
Description This platform represents all slides of Series 3, i.e. 3_1_4, 3_1_5 and 3_2_1, which are fully identical in their properties.
Lot number: 10205000B
Support: Corning GAPS II; Coating: Gamma Amino Propyl Silane
Number of spots: 27.648
Number of pins/blocks: 48
Spottdistance in µm: 180
Recurrances spots/slide: 1
Number of spots vertical: 24
Number of spots horinzontal: 24
Vertical offset of first block in µm: 1200
Horizontal offset of first block in µm: 3150
 
Web link http://www.picme.at
Contributor(s) Martin F, Leple JC, Kangasjarvi J, Fluch S
Submission date Oct 22, 2007
Last update date Nov 14, 2008
Contact name Dieter Kopecky
URL http://www.picme.at
Organization name Austrian Research Centers GmbH - ARC
Department Biogenetics/Natural Resources
Lab PICME
Street address Campus Seibersdorf
City Seibersdorf
ZIP/Postal code A-2444
Country Austria
 
Samples (10) GSM240407, GSM240408, GSM240409, GSM240410, GSM275582, GSM275583 
Series (3)
GSE9470 Transcriptional profiling of UV-B response of Populus alba.
GSE10873 Ozone exposure of tolerant and sensitive F2 genotypes of Populus
GSE10932 Ozone Exposure of Populus

Data table header descriptions
ID Unambiguous identifier of a spot
Block Block# of spot on array
Row Row# of spot in block
Column Column# of spot in block
Provider_ID PICME ID for spotted cDNA
Name cDNA name in corresponding library from which cDNA originated
Status PCR status (OK, contaminated, unsuccessful, ...)
GB_ACC GenBank Accession#
Genus Genus of spotted cDNA
Species Species of spotted cDNA
Library Exact library name of spotted cDNA
Gel_Seq_Length Sequence Length determined from agarosis gel analysis
SEQUENCE Sequence from PICME-internal sequencing if available, NCBI Sequence otherwise
SPOT_ID

Data table
ID Block Row Column Provider_ID Name Status GB_ACC Genus Species Library Gel_Seq_Length SEQUENCE SPOT_ID
10101 1 1 1 [297592][81306] OligoCy3 OK no length information --OligoCy3
10102 1 1 2 [297580][81298] Spottingbuffer OK no length information --Spottingbuffer
10103 1 1 3 [297688][81402] OligoCy5 OK no length information --OligoCy5
10104 1 1 4 [297676][81298] Spottingbuffer OK no length information --Spottingbuffer
10105 1 1 5 [297784][43957] HTAU441 OK NM_005910.3 Homo Homo sapiens no length information ACAGCGGAAGATGTGACAGCACCCTTAGTGGATGAGGGAGCTCCCGGCAAGCAGGCTGCCGCGCAGCCCCACACTGAGATCCCAGAAGGAACCACAGCTGAAGAAGCAGGCATTGGAGACACCCCCAGCCTGGAAGACGAAGCTGCTGGTCACGTGACCCAAGCTCGCATGGTCAGTAAAAGCAAAGACGGGACTGGAAGCGATGACAAAAAAGCCAAGGGGGCTGATGGTAAAACGAAGATCGCCACACCGCGGGGAGCAGCCCCTCCAGGCCAGAAGGGCCAGGCCAACGCCACCAGGATTCCAGCAAAAACCCCGCCCGCTCCAAAGACACCACCCAGCTCTGGTGAACCTCCAAAATCAGGGGATCGCAGCGGCTACAGCAGCCCCGGCTCCCCAGGCACTCCCGGCAGCCGCTCCCGCACCCCGTCCCTTCCAACCCCACCCACCCGGGAGCCCAAGAAGGTGGCAGTGGTCCGTACTCCACCCAAGTCGCCG
10106 1 1 6 [297772][81298] Spottingbuffer OK no length information --Spottingbuffer
10107 1 1 7 [297880][43957] HTAU441 OK NM_005910.3 Homo Homo sapiens no length information ACAGCGGAAGATGTGACAGCACCCTTAGTGGATGAGGGAGCTCCCGGCAAGCAGGCTGCCGCGCAGCCCCACACTGAGATCCCAGAAGGAACCACAGCTGAAGAAGCAGGCATTGGAGACACCCCCAGCCTGGAAGACGAAGCTGCTGGTCACGTGACCCAAGCTCGCATGGTCAGTAAAAGCAAAGACGGGACTGGAAGCGATGACAAAAAAGCCAAGGGGGCTGATGGTAAAACGAAGATCGCCACACCGCGGGGAGCAGCCCCTCCAGGCCAGAAGGGCCAGGCCAACGCCACCAGGATTCCAGCAAAAACCCCGCCCGCTCCAAAGACACCACCCAGCTCTGGTGAACCTCCAAAATCAGGGGATCGCAGCGGCTACAGCAGCCCCGGCTCCCCAGGCACTCCCGGCAGCCGCTCCCGCACCCCGTCCCTTCCAACCCCACCCACCCGGGAGCCCAAGAAGGTGGCAGTGGTCCGTACTCCACCCAAGTCGCCG
10108 1 1 8 [297868][43941] Hbeta-Sinuclein OK NM_001001502.1 Homo Homo sapiens no length information TTCCTCCTGGGGTGGGTCCTCATAACTCTCCCCTTCTGGCTCCATCAGGGGCTCAATCAGTGGTTCTTCAGCAGCTTCCTGGGCCACTTCCTCTGGCTTCAGATCAGTANGGAATTCCTCCCTCTTCACCAGTCCTGTGGCTGCTGCGATGTTCCCTGCCCCAGAGAACACAGCTCCTCCCAGATGTGAGGCCTGTTCCTTGGTTTTTTCAGACACTGAAGCCACACCTTGTACCACACCTTCTCGGGTCTTGCTTCCGACGTAGAGGACGCCCTCCTTGGTCTTCTCCGCCGCCTCGGAGACCCCCTGCTTGGTTTTCTCCGCGGCT
10109 1 1 9 [178101][43925] Cy3Oligo OK 557bp --Cy3--Oligo
10110 1 1 10 [178095][43925] Cy3Oligo OK 551bp --Cy3--Oligo
10111 1 1 11 [178125][43925] Cy3Oligo OK 564bp --Cy3--Oligo
10112 1 1 12 [178119][43925] Cy3Oligo OK 556bp --Cy3--Oligo
10113 1 1 13 [178149][43925] Cy3Oligo OK 566bp --Cy3--Oligo
10114 1 1 14 [178143][43925] Cy3Oligo OK 558bp --Cy3--Oligo
10115 1 1 15 [178173][43925] Cy3Oligo OK 567bp --Cy3--Oligo
10116 1 1 16 [178167][43925] Cy3Oligo OK 562bp --Cy3--Oligo
10117 1 1 17 [178485][7254] R09A12 OK CA822500 Poplar Populus trichocarpa x Populus deltoides Populus balsamifera subsp. trichocarpa x Populus deltoides, two-month-old roots from clone 'Beaupre' 1320bp CTGCATATAAATGCAACACAAAACTCGAATCTTCTCTCTGTCTTCTCGATTCCTTGTTTCTTGATCTGTTCTGTCACAACAACGTAACAACCATGTCTCAGGTACCCAAATCTTCATTTCTTGATTCTTCTTTTTTGGGGGCAAAGTTCGTATTTTTATTGTTNGTTAATACTATGTTCTTGTTGTTTTGACTTGTATTGGGATGTCTATGAATTTTGGCTGAATTTGGGTGGATATGTTGGA
10118 1 1 18 [178479][7248] R09A06 OK CA822494 Poplar Populus trichocarpa x Populus deltoides Populus balsamifera subsp. trichocarpa x Populus deltoides, two-month-old roots from clone 'Beaupre' no length information CCGAGACTGGCGAATTTGCCGGGAAATGGTGACTTCCCCCGATTCCGACTCCGGCGGCCATTCTTCAATACAATATTTTCGGTAATCTTTTTGAAATCCGTCGAAATATCGACCTCCGATCACTCCGATTGGTCGTGGTGCCTACGGCATCGTCTGCTCTGTGTTGAATTCGGAGACGAACGAGATGGTGGCGGTGAAGAAGATAGCCAACGCTTTTGATATCAAATGGACGCCAAGCGCACCCTTCGTGAGATAAACTGCTTCGCCATTCGGAT
10119 1 1 19 [178509][7178] R08B03 OK CA822424 Poplar Populus trichocarpa x Populus deltoides Populus balsamifera subsp. trichocarpa x Populus deltoides, two-month-old roots from clone 'Beaupre' 496bp CTAGCTTCCACAGCCAGATAAACACACAGGAGGNGCGCGATTCCCACCTTTCAAAGATGCCGATCAGGAACATTGCCGTGGGCCACTACCGTGAGAACAACTCAGCCAGAATGCCTTGAAGGCAGCCTTGGCTGAGTTCATCTCCACCCTTATTTTTGTCTTTGCCGGTGAAGGGTCCGGCATGGCCTTCAGCAAACTCACCGATGGAGCTTCCAACACACCCGCTGGACTCATAGCCGCAGCTATAGCCCATGCTTTCGCTCTTTTTGTTGCTGTTTCTGTTGGTGCCAACATCTCCGGTGGCCATGTCAACCCCG
10120 1 1 20 [178503][7271] R09C06 OK CA822517 Poplar Populus trichocarpa x Populus deltoides Populus balsamifera subsp. trichocarpa x Populus deltoides, two-month-old roots from clone 'Beaupre' no length information TGAATTTTCTTGTTGAAGTGATTGATGATGCCTCTTGTTAAGAAAGCTTTTTGATGTTGTTCCTTTCCACACATCCTCCATCTTGCTGCACAAGCTGGGGTTCGTTATGCCATACAAAACCCACAATCCTACGTGAGCTCAAACATTGCAGGTTTTGTCAATCTTCTTGAAGTTGCAAAAGCTGCAAATCCCAGCCAGCTATTGTCTGGGCATCATCAAGTTCAGTTATGGACTGAACACTCAAGTACCCTTCTCAGAATTGGATAGAACAGATCANCCAGCAAGTCTTTTGCC

Total number of rows: 27648

Table truncated, full table size 16920 Kbytes.




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