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Platform GPL6046 Query DataSets for GPL6046
Status Public on Oct 27, 2007
Title PICME Poplar 28K Series 4_4/4_5
Technology type spotted DNA/cDNA
Distribution custom-commercial
Organisms Populus trichocarpa x Populus deltoides; Populus euphratica; Populus tremula x Populus alba
Manufacturer Austrian Research Centers GmbH - ARC, PICME
Manufacture protocol Spottingbuffer: 3xSSC+ 1,5MBetain
Spottingplate setting: Biozym 10µl
Arrayer Hardware: GeneMachines Omnigrid II
Arrayer Software: OmniGrid Gridder 2.2.13
Humidity: 40%
Dipping time in sec: 1
Support glass
Coating aminosilane
 
Description This platform represents all slides of the later Series 4, i.e. 4_4 and 4_5, which are fully identical in their properties except the lot number.
PICME Poplar 28K 4_4 uses lot numbers: 34705000B; 01606000B
PICME Poplar 30K 4_5 uses lot number: 23706000
Support: Corning GAPS II; Coating: Gamma Amino Propyl Silane
Number of spots: 27.264
Number of pins/blocks: 48
Spottdistance in µm: 170
Recurrances spots/slide: 1
Number of spots vertical: 24
Number of spots horinzontal: 24
Vertical offset of first block in µm: 1200
Horizontal offset of first block in µm: 3150
 
Contributor(s) Martin F, Leple JC, Kangasjarvi J, Fluch S
Submission date Oct 23, 2007
Last update date Nov 14, 2008
Contact name Dieter Kopecky
URL http://www.picme.at
Organization name Austrian Research Centers GmbH - ARC
Department Biogenetics/Natural Resources
Lab PICME
Street address Campus Seibersdorf
City Seibersdorf
ZIP/Postal code A-2444
Country Austria
 

Data table header descriptions
ID Unambiguous identifier of a spot
Block Block# of spot on array
Row Row# of spot in block
Column Column# of spot in block
Provider_ID PICME ID for spotted cDNA
Name cDNA name in corresponding library from which cDNA originated
Status PCR status (OK, contaminated, unsuccessful, ...)
GB_ACC GenBank Accession#
Dilution Dilution Ratio
Genus Genus of spotted cDNA
Species Species of spotted cDNA
Library Exact library name of spotted cDNA
Gel_Seq_Length Sequence Length determined from agarosis gel analysis
SEQUENCE Sequence from PICME-internal sequencing if available, NCBI Sequence otherwise
SPOT_ID

Data table
ID Block Row Column Provider_ID Name Status GB_ACC Dilution Genus Species Library Gel_Seq_Length SEQUENCE SPOT_ID
10101 1 1 1 [686651][81306] OligoCy3 OK no length information OligoCy3
10102 1 1 2 [686555][81298] Spottingbuffer OK no length information --Spottingbuffer
10103 1 1 3 [686603][81402] OligoCy5 OK no length information OligoCy5
10104 1 1 4 [686507][81298] Spottingbuffer OK no length information --Spottingbuffer
10105 1 1 5 [686713][8864] R34G04 OK CA824001 Poplar Populus trichocarpa x Populus deltoides Populus balsamifera subsp. trichocarpa x Populus deltoides, two-month-old roots from clone 'Beaupre' no length information CGAATGAAGAAAGAAACACAAAGAACAATTACAGTTATTCTGAACGGTGAGAGGAAATGGCAGAGAGTGAGGATATTCAGCCTCTTGTTTGCGACAATGGTACCGGAATGGTCAAGGCTGGGTTTGCTGGGGATGATGCACCAAGGGCTGTTTTTCCAAGCATCGTGGGTCGCCCACGCCACACTGGAGTGATGGTTGGCATGGGTCAAAAAGATGCCTATGTTGGCGATGAGGCTCAATCAAAGAGAGGTATTTTGACTTTGAAATACCCAATTGAGCATGGTATCGTTAGCAACTGGGATGATATGGAGAAGATTTGGCATCACACCTTCTACAATGAGCTCCGTGTGGCTCCTGAAGAGCATCCAGTTCTCCTTACAGAAGCTCCTCTTAACCCCAAGGCCAATCGTGAGAAAATGACCCAGATCATGTTTGAGACCTTCAACACTCCTGCAATGTATGTCGCTATCCAGGCTGTACTTTCCCTCTATGCCAGTGGTCGTACAACTGGTATTGTTCTGGACTCTGGAGATGGTGTGAGTCACACAGTTCCCATCTATGAAGGCTATGCCCTCCCACATGCCATTCTGCGTCTNGACCTGGCANGTCGTGATCTCAC
10106 1 1 6 [686724][8864] R34G04 OK CA824001 1:10 Poplar Populus trichocarpa x Populus deltoides Populus balsamifera subsp. trichocarpa x Populus deltoides, two-month-old roots from clone 'Beaupre' no length information CGAATGAAGAAAGAAACACAAAGAACAATTACAGTTATTCTGAACGGTGAGAGGAAATGGCAGAGAGTGAGGATATTCAGCCTCTTGTTTGCGACAATGGTACCGGAATGGTCAAGGCTGGGTTTGCTGGGGATGATGCACCAAGGGCTGTTTTTCCAAGCATCGTGGGTCGCCCACGCCACACTGGAGTGATGGTTGGCATGGGTCAAAAAGATGCCTATGTTGGCGATGAGGCTCAATCAAAGAGAGGTATTTTGACTTTGAAATACCCAATTGAGCATGGTATCGTTAGCAACTGGGATGATATGGAGAAGATTTGGCATCACACCTTCTACAATGAGCTCCGTGTGGCTCCTGAAGAGCATCCAGTTCTCCTTACAGAAGCTCCTCTTAACCCCAAGGCCAATCGTGAGAAAATGACCCAGATCATGTTTGAGACCTTCAACACTCCTGCAATGTATGTCGCTATCCAGGCTGTACTTTCCCTCTATGCCAGTGGTCGTACAACTGGTATTGTTCTGGACTCTGGAGATGGTGTGAGTCACACAGTTCCCATCTATGAAGGCTATGCCCTCCCACATGCCATTCTGCGTCTNGACCTGGCANGTCGTGATCTCAC
10107 1 1 7 [686725][8864] R34G04 OK CA824001 1:20 Poplar Populus trichocarpa x Populus deltoides Populus balsamifera subsp. trichocarpa x Populus deltoides, two-month-old roots from clone 'Beaupre' no length information CGAATGAAGAAAGAAACACAAAGAACAATTACAGTTATTCTGAACGGTGAGAGGAAATGGCAGAGAGTGAGGATATTCAGCCTCTTGTTTGCGACAATGGTACCGGAATGGTCAAGGCTGGGTTTGCTGGGGATGATGCACCAAGGGCTGTTTTTCCAAGCATCGTGGGTCGCCCACGCCACACTGGAGTGATGGTTGGCATGGGTCAAAAAGATGCCTATGTTGGCGATGAGGCTCAATCAAAGAGAGGTATTTTGACTTTGAAATACCCAATTGAGCATGGTATCGTTAGCAACTGGGATGATATGGAGAAGATTTGGCATCACACCTTCTACAATGAGCTCCGTGTGGCTCCTGAAGAGCATCCAGTTCTCCTTACAGAAGCTCCTCTTAACCCCAAGGCCAATCGTGAGAAAATGACCCAGATCATGTTTGAGACCTTCAACACTCCTGCAATGTATGTCGCTATCCAGGCTGTACTTTCCCTCTATGCCAGTGGTCGTACAACTGGTATTGTTCTGGACTCTGGAGATGGTGTGAGTCACACAGTTCCCATCTATGAAGGCTATGCCCTCCCACATGCCATTCTGCGTCTNGACCTGGCANGTCGTGATCTCAC
10108 1 1 8 [686711][8864] R34G04 OK CA824001 1:30 Poplar Populus trichocarpa x Populus deltoides Populus balsamifera subsp. trichocarpa x Populus deltoides, two-month-old roots from clone 'Beaupre' no length information CGAATGAAGAAAGAAACACAAAGAACAATTACAGTTATTCTGAACGGTGAGAGGAAATGGCAGAGAGTGAGGATATTCAGCCTCTTGTTTGCGACAATGGTACCGGAATGGTCAAGGCTGGGTTTGCTGGGGATGATGCACCAAGGGCTGTTTTTCCAAGCATCGTGGGTCGCCCACGCCACACTGGAGTGATGGTTGGCATGGGTCAAAAAGATGCCTATGTTGGCGATGAGGCTCAATCAAAGAGAGGTATTTTGACTTTGAAATACCCAATTGAGCATGGTATCGTTAGCAACTGGGATGATATGGAGAAGATTTGGCATCACACCTTCTACAATGAGCTCCGTGTGGCTCCTGAAGAGCATCCAGTTCTCCTTACAGAAGCTCCTCTTAACCCCAAGGCCAATCGTGAGAAAATGACCCAGATCATGTTTGAGACCTTCAACACTCCTGCAATGTATGTCGCTATCCAGGCTGTACTTTCCCTCTATGCCAGTGGTCGTACAACTGGTATTGTTCTGGACTCTGGAGATGGTGTGAGTCACACAGTTCCCATCTATGAAGGCTATGCCCTCCCACATGCCATTCTGCGTCTNGACCTGGCANGTCGTGATCTCAC
10109 1 1 9 [322828][6880] R04A12 OK CA822127 Poplar Populus trichocarpa x Populus deltoides Populus balsamifera subsp. trichocarpa x Populus deltoides, two-month-old roots from clone 'Beaupre' 1234bp GACGGCTCTTGTCACTGGTGGAACCAAAGGGATTGGTTATGCTGTTGTGGATGAGTTGGCAGCGCTAGGGGCAATCGTGCATACATGTGCGAGGAACCAAGACCAGCTCAATGAACGCATCCGTGAATGGAATGAGAAGGGTTTTAAAGTTACTGGTTCAGTCTGTGATGTATCCTCTGATGCTGAAAGAGAGAAGCTGATGGAGGAGGTTTCCTCTCGCTTTGATGGTAAACTTAATATCCTTGTAAACAATGCTGGGACAAACATATATAAAGCGACCTTAGATTACACAGCTGAGGATTTCACATCTCTCATGAACACAAACCTTCAATCTGCTTTCCATTTGTCCCAACTTGCACATCCCCTTTTGAAAGCTTCAGGGGCTGGAAAGATTGTCTTCATGTCTTCCATTGGTAGTGTGGTATCTGTAAACCCTCAGTATCCTTTGTATTCAGCTTCTAAAGGTGCAATGAACCAATTACAAGGAATTTGGGTGCGAATGGGCTAAGGACAATATAAGGGTTAA
10110 1 1 10 [322822][6874] R04A06 OK CA822121 Poplar Populus trichocarpa x Populus deltoides Populus balsamifera subsp. trichocarpa x Populus deltoides, two-month-old roots from clone 'Beaupre' 753bp GGAGGTTAATTGTACAGCGATAGGAGGAGGAAGACTGTGTTTCTGGGAATAGCTGAGCTGCGAAGATGCCGGAGAAATCAGGGNAAAGGAAGAAAGGAAGAGGTTATCACCAGAGAATACACCATCAACCTTCACAAACGCTTGCATGGATGCACCTTCAAGAANAAGGCTCCAAAGGCCATCAAGGAGATAAGGAAGTTTGCTCAAAGGCCATGAANACAACTGATGTCAGAGTTGATGTTAAGCTGANGAAGCATGTGTGGAGCCGAGGTATTAGGAGTGTGCCAAGGAGAGTTCGTGTTCGCGTTGCCCGGAAGAGGAATGATGAAGAAGATGCCAAGGGAAGAATTTTATTCCCTTGTCACTGTTTCAGAGCTTCCTCCAGAGGGATTTAAGGGGTTGGGCACCAAGGTCATTGATGACGAAGAAGAATGAAGTAACCTGCCTCCTTAGTGTTCTATGTTAAGTTGCAGTTTTGGCTATATTNGTTGATTCATCCAGCTGAATTTCATTTTGTNNCTCGGATTCTCTTGGAGACATCTTTAACAAAGAAAGTATCCTNTGGACGCAA
10111 1 1 11 [322852][6903] R04C12 Contaminated CA822150 Poplar Populus trichocarpa x Populus deltoides Populus balsamifera subsp. trichocarpa x Populus deltoides, two-month-old roots from clone 'Beaupre' no length information CATGGAGAATACTATCTTCCATTGAACAGAAGGAGGAGGCCAAGGGGAATGAACAGAATGTGAAGAGGATAAAGCAGTACAGGCAGAGGGTTGAAGATGAACTTGCAAAGATCTGCAATGATATATTATCAGTCATTGATCAGCATCTCATCCCATCCTCCTCAACTGGGGAATCAACTGTCTTTTACTATAAGATGAAGGGAGACTATTATCGTTATTTAGCTGAATTTAGAAGTGCTGATGAACGTAAAGAAGCTGGAGATCAGTCCTTAAGGCTTATGAGGCAGCAACCTCTATGCTATCTCAGATCTGCCTCCTAACCATTNCAATTAGAATTGGCTGGAACTCNAANTTTTCGGT
10112 1 1 12 [322846][6897] R04C06 Contaminated CA822144 Poplar Populus trichocarpa x Populus deltoides Populus balsamifera subsp. trichocarpa x Populus deltoides, two-month-old roots from clone 'Beaupre' no length information CATATGGCGGANCACTACATTTCTACTTGGTTGTCTTAGCTAGCTAGAGCGTCCAAGCAATGGCTCCAACACTTGCAGTGTCATTCAATGAATCCTCAGATATCACTGATTGTGTCCTGAACAAAGGCAATGGAGTAAAGGGTCTCTCCGAAATGGGCCTCGAAAGCCTCCCCAAGCAATATATCCAACCCCTTGAGGAAAGAATGTGTGGTACCAAAATCATGTCCCATGAATCCATTCCCATCATTGACATGTCAAAATGGGATGACCCTAAAGTTGCTGAAGCAATCTGTGAGGCTGCAGAGAAATGGGGATTCTTCCAGATTATTAACCATGGAGTTCCCATTGAAGTACTTGAGAATGTTAAGGAAGCAACTCATCAGTTCTTCAGATTACCAGCAGAGGAAAAGAGGAAGTATTTAAAAGAGTTTTCTCCCTCTAACAACGTGCGGTTTTGGCACAAGCCTTAGTCCTGAAGCTGAGAAGGCTTTAGAGTGGAAAGATTACCTTAGTCTCTTTTATGTCTCCGAGGATGAGGCTTCTGCATTGTGGCTGCGGTTTGCAAGGATCAAGTGCTAGAGTACATGAAGAGATCAGAAACTGNTATCAGAAAGCTACTGGATGTGCTAATGAAGAATCTGAATGTGACTGAGATCCGATGAGACAAAGATCCTCTTATGGGNCAAAGGNAACCTAAAAAACGATTGGCAAC
10113 1 1 13 [322876][6923] R04E12 PCR Unsuccessful CA822170 Poplar Populus trichocarpa x Populus deltoides Populus balsamifera subsp. trichocarpa x Populus deltoides, two-month-old roots from clone 'Beaupre' no length information CGGGAGGGTTGTGACAAGATGCATACTTTTCTTCGTCAACAAGGTTTTGAGATTCAAACAGATCAAGGTGTTTTTAGTGAATTGGCTGAGGTCATTATAAATGGAGATCCGTATGGATTTCTTGAATTGTCTTGACCATGACACATCAATGAAGATTCTCAGGTGTTTTGGAAGATCCATCTGATCTTGTCCGTGCTAGTTATGTCTCTCGTTCTTGGCGAGATTTTGTGATTGCAAATGGTCTTTGTAAGCAGCTGTGCTTGAGTATGTTTCCTCACTTGCTTAGAGTTGATTGTGTAATTGAACCTAGCTGTGTTATGGAAAAAGCTTCAGAAGTCGGATGTAGCAAATCTGTGGAATGGGAAACTCTGAAGAGGGAGCATAAAGCATATGCATTTCTAGCTCAAGCGTGCTTGTCATTTCCTTTTGATGATTGCATTAAGGATGCAATAAGTGCTTCTAGCACTGATAATTATCCAGAGGAAAGCATTCGT
10114 1 1 14 [322870][6673] R01E12 OK CB833328 Poplar Populus trichocarpa x Populus deltoides Populus balsamifera subsp. trichocarpa x Populus deltoides, two-month-old roots from clone 'Beaupre' 721bp GGGGGAGTAGAGAGAGAGAGAGACGCAAAACATGGAGAAGCAGCAGTCCTCCATTTTCTCTCAAAAAGTAAAAGCCTGCGTTGAATAGAAGAAAGCAAGACCCAACAATCCCCCTGTCTCTATAAAATCTTGTTCTACCCTTGTCTTGCCTTTGTTATTCTTGCCTCGACCGATCCCTATAAGAAGAAGCACAATCATGCGGCAGATTTAAACGGCTTCGCCTTTTGTCCCTGTGCTTGCATCACCAATCCGCTAGATCTTACGCCACTAGTTGATACTGTTAATCTTAATCATTCATGTCTCCGATGCTCCATTTCGTGTATTTATTTTTTCATAATGGTCCTATCCGAACAGTAGTTAAACTCAGAGCTGTGTTTCTTTGAATTTATAGATAGAGCGGCTTTTTGTCCGATCTAGTCATCTTGTTTTGTAAATTATTTTAGGTTACTTGTATAATCTCTGATTCTTTTTTTATTTGCTAGATGTCAGGATTTACNNTNCAGNTGATCACCAAATAATCTTGAANTGTGA
10115 1 1 15 [322900][6701] R01H12 OK CB833347 Poplar Populus trichocarpa x Populus deltoides Populus balsamifera subsp. trichocarpa x Populus deltoides, two-month-old roots from clone 'Beaupre' 868bp TCTCATGGTGAGTGGAGTGGTTCTGGGAAAGATAACAAGCAACACAACGTACCTGCAAACCGTGAAAGGCAGATACAGAATACACATTATGAGTGCCAGCCAGTAGGGCCACAAAATACTTACAAAGCTAACAGTTTTGAATCTTCAAAAGATGTTTCCCATAATTCTGTTGCAAGGTCCAGGGAGAGAGGTCAGGGTCGCTCAAGGCATGGCGGGGGAAACTCTCATGGATGGCAAACTGGTAGTAGTGTTCGAGTAGATGCCAATTATGATTAGGGATGAAACTCTCAGATCGGTCCTGGTGTGTCAAAAAACCATGCCTTCATAAAAGTTTGGGCTTGATCCCTCACAGTTTCAGGTATTTTAGTTTAGGTAGTCATATTCTGCTGTACGTAATATTGGATCATCACAGCTGATGGCATATTAATTGAGCAGGGCTT
10116 1 1 16 [322894][6940] R04G06 PCR Unsuccessful CA822187 Poplar Populus trichocarpa x Populus deltoides Populus balsamifera subsp. trichocarpa x Populus deltoides, two-month-old roots from clone 'Beaupre' no length information CGCAGTGAGTTTGCCATGGCTGAGATTGAGGAAACAGAAGTGATGAGAAAAGCACAGCAAGAATTGGATGAAGTGATCGGAAAGGACAGAATGGTACAGGAATCTGACATAAACAAATTGCCATATCTCTATGCCACCATGAAGGAGTCATTGAGGCTGCACCCAGTGCTTCCATTACTAGTCCCTCATTGCCCTAGTCAAACATGCACAGTAGGAGGCTACACTATCCCCAAGGGCGTTAGGGTTTTTTGTGAACGTCTGGGCTATACACAGGGACCCTACAGTATGGGAAAATCCGTTAGATTTTAATCCTGAGAGGTTCTTGAATGGTAGCAGTAAGTGGGACTATTCTGGGAGTGACCTGAGCTATTTTCCATTTGGGTCTGGAAGGAGAAGCTGTGCTGGAATCGCCATGGCTGAGAGGATGTTCATGTACTTCCTCGCCACACTCTTACACTGTTTTGACTGGGAATTACCAGAGGGAAAGGAGCCAGATCTTTCAGAGAAGTTTGGGATTTGTTATAAAGTTGAAGAATCCTCTTGTNGTGATCCCAGTCCAAGGTTACTGATCAAACTCTATGTAGTAGATGGGAAAAGATGTTTTGTGAGGTT
10117 1 1 17 [323212][7239] R08H09 PCR Unsuccessful CA822485 Poplar Populus trichocarpa x Populus deltoides Populus balsamifera subsp. trichocarpa x Populus deltoides, two-month-old roots from clone 'Beaupre' no length information CTCTTTACACTCTCACTGTATTTGCTTTACCTCCTCCCTTCGCTATCAACGAACGATCTTAAACAAATCGCTCTCTCTCTCTCTCTCTCGATCTTCACCAATGGCAAAGGAACCAGTTCGCGTTCTCGTTACCGGAGCTGCAGGACAAATTGGATATGCCCTCGTTCCCATGATTGCTAGGGGAGTGATGCTTGGTCCTGACCAGCCTGTGATCCTCCACATGCTTGATATCCCACCTGCAGCTGAGGCATTGAATGGTGTGAAGATGGAGTTGGTAGATGCCGCGTTTCCTCTTCTTAAAGGTGTTGTTGCCCAACCGATGTTGTGGAGGCCTGCACTGGGG
10118 1 1 18 [323206][7190] R08C06 PCR Unsuccessful CA822436 Poplar Populus trichocarpa x Populus deltoides Populus balsamifera subsp. trichocarpa x Populus deltoides, two-month-old roots from clone 'Beaupre' no length information GGGGCTTTTACAAAATTTCAGAATTTTAGAANACAGTTTCTTGAAAATTCCAAGATGGCCCGTACCAAGCAAACTGCTCGTAAATCTACAGGAGGAAAGGCCCCAAGGAAGCAGCTTGCTCTAAGGCTGCCCGTAAGTCTGCCCCAACCACTGGTGGAGTGAAGAAGCCTCACCGATACCGCCCTGGAACTGTTGCTCTTCGTGAAATCCGTAAATATCAAGAAGAGCACGGAGCTCTTGATCAGGAAACTCCCATTCCAGAGGCTTGTTCGTGAAATTGCCCAGGACTTCAAGACTGATCTGCGTTTCCAGAGCCATGCTGTGCTGGCGCTGCAAGAGGCA
10119 1 1 19 [323236][7173] R08A10 Contaminated CA822419 Poplar Populus trichocarpa x Populus deltoides Populus balsamifera subsp. trichocarpa x Populus deltoides, two-month-old roots from clone 'Beaupre' no length information ATAAGAGATCCCGGAAAGCGGCAAGGGTTTGGTTAGGGACGTTTAACACTGCAGAGGAGGCGGCAAGGGCTTATGACAAGGCAGCCATTGATTTTAGAGGGCCAAGAGCTAAGCTTAATTTTCCATTTCCTGATAGTGGTATTGCTAGTTTTGAAGAGAGTAAAGAAAAGCAAGAAAAGCAGCCGGAAATCAGTGAGAAGAGAAGTGAATTTGAAACGGAAATGGGGAAAGACAATGAGTTCTTGGATAATATTGTAGACGAAGAGTTCAAGAATGGATGACAATGATCATGGATTTTGGG
10120 1 1 20 [323230][7201] R08D06 OK CA822447 Poplar Populus trichocarpa x Populus deltoides Populus balsamifera subsp. trichocarpa x Populus deltoides, two-month-old roots from clone 'Beaupre' 719bp AATGAACAGCTTGACAAATTCAGTTTCTAANCAAAACTTTCCAGGCCTCTTTATCCTATTTTACCTGCAGAAAATGTCTGGCTGTAGCTGTGGCTCTGACTGCAAGTGTGGCAGTGGCTGCAAATGTGGCATGTACCCTGACTTANGTTTCTCAGAGAACACCACAACTGAGACAATCATTGCAGGTGTTGCACCAGTTAAGATGTTCTATGAGAGGTCTGAGATGGACTTCGGTGCTGAGAATGGCTGCAAGTGTGGATCAAACTGCACCTGTGATCCATGCTCCTGCAAATGAGGACACATGGGCATGGTTCCAACAAAGCAGTAGT

Total number of rows: 27648

Table truncated, full table size 16865 Kbytes.




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