GEO help: Mouse over screen elements for information.
Status
Public on Dec 13, 2007
Title
Illumina humanRef-8 v1.0 expression beadchip
Technology type
oligonucleotide beads
Distribution
commercial
Organism
Homo sapiens Manufacturer
Illumina Inc.
Manufacture protocol
see manufacturer's website
Description
The HumanRef-8 Expression BeadChip contains eight arrays of > 24,000 probes derived from the RefSeq database.http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html
Submission date
Nov 08, 2007
Last update date
Jan 18, 2013
Organization
Illumina Inc.
E-mail(s)
expression@illumina.com, techsupport@illumina.com Phone
1 800 809 4566
URL
http://www.illumina.com Street address
9885 Towne Centre Drive
City
San Diego
State/province
CA
ZIP/Postal code
92121
Country
USA
Samples (473)
GSM301398 , GSM301399 , GSM301400 , GSM342099 , GSM342100 , GSM342101
GSM342102 ,
GSM342103 ,
GSM342104 ,
GSM342105 ,
GSM342106 ,
GSM342107 ,
GSM342108 ,
GSM342109 ,
GSM342110 ,
GSM342111 ,
GSM342112 ,
GSM342113 ,
GSM342114 ,
GSM342115 ,
GSM342116 ,
GSM342117 ,
GSM342118 ,
GSM342119 ,
GSM342120 ,
GSM342121 ,
GSM342122 ,
GSM342123 ,
GSM342124 ,
GSM342125 ,
GSM342126 ,
GSM342127 ,
GSM342128 ,
GSM342129 ,
GSM342130 ,
GSM342131 ,
GSM342132 ,
GSM342133 ,
GSM342134 ,
GSM529632 ,
GSM529633 ,
GSM529634 ,
GSM529635 ,
GSM529636 ,
GSM529637 ,
GSM529638 ,
GSM529639 ,
GSM529640 ,
GSM529641 ,
GSM529642 ,
GSM529643 ,
GSM529644 ,
GSM529645 ,
GSM529646 ,
GSM529647 ,
GSM529648 ,
GSM529649 ,
GSM529650 ,
GSM529651 ,
GSM529652 ,
GSM529653 ,
GSM529654 ,
GSM529655 ,
GSM529656 ,
GSM529657 ,
GSM529658 ,
GSM529659 ,
GSM529660 ,
GSM529661 ,
GSM529662 ,
GSM529663 ,
GSM529664 ,
GSM529665 ,
GSM529666 ,
GSM529667 ,
GSM529668 ,
GSM529669 ,
GSM529670 ,
GSM529671 ,
GSM529672 ,
GSM529673 ,
GSM529674 ,
GSM529675 ,
GSM529676 ,
GSM529677 ,
GSM529678 ,
GSM529679 ,
GSM529680 ,
GSM529681 ,
GSM529682 ,
GSM529683 ,
GSM529684 ,
GSM529685 ,
GSM529686 ,
GSM529687 ,
GSM529688 ,
GSM529689 ,
GSM529690 ,
GSM529691 ,
GSM529692 ,
GSM529693 ,
GSM529694 ,
GSM529695 ,
GSM529696 ,
GSM529697 ,
GSM529698 ,
GSM529699 ,
GSM529700 ,
GSM529701 ,
GSM529702 ,
GSM529703 ,
GSM529704 ,
GSM529705 ,
GSM529706 ,
GSM529707 ,
GSM529708 ,
GSM529709 ,
GSM529710 ,
GSM529711 ,
GSM529712 ,
GSM529713 ,
GSM529714 ,
GSM529715 ,
GSM529716 ,
GSM529717 ,
GSM529718 ,
GSM529719 ,
GSM529720 ,
GSM529721 ,
GSM553184 ,
GSM553185 ,
GSM553186 ,
GSM553187 ,
GSM553188 ,
GSM553189 ,
GSM553190 ,
GSM553191 ,
GSM553192 ,
GSM553193 ,
GSM553194 ,
GSM553195 ,
GSM553196 ,
GSM553197 ,
GSM553198 ,
GSM553199 ,
GSM553200 ,
GSM553201 ,
GSM553202 ,
GSM553203 ,
GSM553204 ,
GSM553205 ,
GSM553206 ,
GSM553207 ,
GSM553208 ,
GSM553209 ,
GSM553210 ,
GSM553211 ,
GSM553212 ,
GSM553213 ,
GSM553214 ,
GSM553215 ,
GSM553216 ,
GSM553217 ,
GSM553218 ,
GSM553219 ,
GSM553220 ,
GSM553221 ,
GSM553222 ,
GSM553223 ,
GSM553224 ,
GSM553225 ,
GSM553226 ,
GSM553227 ,
GSM553228 ,
GSM553229 ,
GSM553230 ,
GSM553231 ,
GSM553232 ,
GSM553233 ,
GSM553234 ,
GSM553235 ,
GSM553236 ,
GSM553237 ,
GSM553238 ,
GSM553239 ,
GSM553240 ,
GSM553241 ,
GSM553242 ,
GSM553243 ,
GSM553244 ,
GSM553245 ,
GSM553246 ,
GSM553247 ,
GSM553248 ,
GSM553249 ,
GSM553250 ,
GSM553251 ,
GSM553252 ,
GSM553253 ,
GSM553254 ,
GSM553255 ,
GSM553256 ,
GSM553257 ,
GSM553258 ,
GSM553259 ,
GSM553260 ,
GSM553261 ,
GSM553262 ,
GSM553263 ,
GSM553264 ,
GSM553265 ,
GSM553266 ,
GSM553267 ,
GSM553268 ,
GSM553269 ,
GSM553270 ,
GSM553271 ,
GSM553272 ,
GSM553273 ,
GSM553274 ,
GSM553275 ,
GSM553276 ,
GSM553277 ,
GSM553278 ,
GSM553279 ,
GSM553280 ,
GSM553281 ,
GSM553282 ,
GSM553283 ,
GSM553284 ,
GSM553285 ,
GSM553286 ,
GSM553287 ,
GSM553288 ,
GSM553289 ,
GSM553290 ,
GSM553291 ,
GSM553292 ,
GSM553293 ,
GSM553294 ,
GSM553295 ,
GSM553296 ,
GSM553297 ,
GSM553298 ,
GSM553299 ,
GSM553300 ,
GSM553301 ,
GSM553302 ,
GSM553303 ,
GSM553304 ,
GSM553305 ,
GSM553306 ,
GSM553307 ,
GSM553308 ,
GSM553309 ,
GSM553310 ,
GSM553311 ,
GSM553312 ,
GSM553313 ,
GSM553314 ,
GSM553315 ,
GSM553316 ,
GSM553317 ,
GSM553318 ,
GSM553319 ,
GSM553320 ,
GSM553321 ,
GSM553322 ,
GSM553323 ,
GSM553324 ,
GSM553325 ,
GSM553326 ,
GSM553327 ,
GSM553328 ,
GSM553329 ,
GSM553330 ,
GSM553331 ,
GSM553332 ,
GSM553333 ,
GSM553334 ,
GSM553335 ,
GSM553336 ,
GSM553337 ,
GSM553338 ,
GSM553339 ,
GSM553340 ,
GSM553341 ,
GSM553342 ,
GSM553343 ,
GSM553344 ,
GSM553345 ,
GSM553346 ,
GSM553347 ,
GSM553348 ,
GSM553349 ,
GSM553350 ,
GSM553351 ,
GSM553352 ,
GSM553353 ,
GSM553354 ,
GSM553355 ,
GSM553356 ,
GSM553357 ,
GSM553358 ,
GSM553359 ,
GSM553360 ,
GSM553361 ,
GSM553362 ,
GSM553363 ,
GSM553364 ,
GSM553365 ,
GSM553366 ,
GSM553367 ,
GSM553368 ,
GSM553369 ,
GSM553370 ,
GSM553371 ,
GSM553372 ,
GSM553373 ,
GSM553374 ,
GSM553375 ,
GSM553376 ,
GSM553377 ,
GSM553378 ,
GSM553379 ,
GSM553380 ,
GSM553381 ,
GSM553382 ,
GSM553383 ,
GSM553384 ,
GSM553385 ,
GSM553386 ,
GSM553387 ,
GSM553388 ,
GSM553389 ,
GSM553390 ,
GSM553391 ,
GSM553392 ,
GSM553393 ,
GSM553394 ,
GSM553395 ,
GSM553396 ,
GSM553397 ,
GSM553398 ,
GSM553399 ,
GSM606081 ,
GSM606082 ,
GSM606083 ,
GSM606084 ,
GSM606085 ,
GSM606086 ,
GSM606087 ,
GSM606088 ,
GSM606089 ,
GSM606090 ,
GSM606091 ,
GSM606092 ,
GSM606093 ,
GSM606094 ,
GSM606095 ,
GSM606096 ,
GSM606097 ,
GSM606098 ,
GSM606099 ,
GSM606100 ,
GSM699278 ,
GSM699279 ,
GSM699280 ,
GSM699281 ,
GSM699282 ,
GSM699283 ,
GSM699284 ,
GSM699285 ,
GSM699286 ,
GSM699287 ,
GSM699288 ,
GSM699289 ,
GSM699290 ,
GSM699291 ,
GSM699292 ,
GSM699293 ,
GSM699294 ,
GSM699295 ,
GSM699296 ,
GSM699297 ,
GSM699346 ,
GSM699347 ,
GSM699348 ,
GSM699349 ,
GSM699350 ,
GSM699351 ,
GSM699352 ,
GSM699353 ,
GSM699354 ,
GSM699355 ,
GSM699356 ,
GSM699357 ,
GSM699358 ,
GSM699359 ,
GSM699360 ,
GSM926188 ,
GSM926189 ,
GSM926190 ,
GSM926191 ,
GSM926192 ,
GSM926193 ,
GSM926194 ,
GSM926195 ,
GSM926196 ,
GSM926197 ,
GSM926198 ,
GSM926199 ,
GSM926200 ,
GSM926201 ,
GSM926202 ,
GSM926203 ,
GSM926204 ,
GSM926205 ,
GSM926206 ,
GSM926207 ,
GSM926208 ,
GSM926209 ,
GSM926210 ,
GSM926211 ,
GSM926212 ,
GSM926213 ,
GSM926214 ,
GSM926215 ,
GSM926216 ,
GSM926217 ,
GSM926218 ,
GSM926219 ,
GSM978134 ,
GSM978135 ,
GSM978136 ,
GSM978137 ,
GSM978138 ,
GSM978139 ,
GSM978140 ,
GSM978141 ,
GSM978142 ,
GSM978143 ,
GSM978144 ,
GSM978145 ,
GSM978146 ,
GSM978147 ,
GSM978148 ,
GSM978149 ,
GSM978150 ,
GSM978151 ,
GSM978152 ,
GSM978153 ,
GSM978154 ,
GSM978155 ,
GSM978156 ,
GSM978157 ,
GSM978158 ,
GSM978159 ,
GSM978160 ,
GSM978161 ,
GSM978162 ,
GSM978163 ,
GSM978164 ,
GSM978165 ,
GSM978166 ,
GSM978167 ,
GSM978168 ,
GSM978169 ,
GSM978170 ,
GSM978171 ,
GSM978172 ,
GSM978173 ,
GSM978174 Series (12)
GSE11926 Transcriptional profiles of Ad-F3 and Ad-F7 transduced macrophages
GSE12120 Transcriptional re-programming of primary human macrophages by IRF-3 and IRF-7
GSE13595 T7-based linear amplification of low concentration mRNA samples using beads and microfluidics
GSE21158 Human tumor cell lines treated with interferon-alpha-2a
GSE22219 Gene expression profiling of early primary breast cancer to identify prognostic markers and associated pathways
GSE22220 Analysis of early primary breast cancer to identify prognostic markers and associated pathways: mRNA and miRNA profiling
GSE24589 Transcriptional response of ovarian cancer cell lines to HGF and CDDP
GSE24590 Enhanced cisplatin therapy for ovarian cancer cell lines
GSE28252 Expression profiles osteosarcoma cell lines and MET transformed osteoblast clones
GSE28256 Expression profiles of human primary osteoblasts (HOB) and MET transformed osteoblast clones
GSE37729 Genome-wide analysis of miRNA-associated transcriptome profiles in multiple cell models
GSE39717 Gene expression analysis of uveal melanoma tumor tissue
Data table header descriptions ID Probe identifier (not unique across products and species but it is the ONLY unique id in these files)
Search_key Internal id useful for custom design array
Target transcript + type
Gid Genbank id
Transcript Internal transcript id
Accession Genbank accession number GB_ACC
GB_ACC Symbol Gene symbol from the source database
Type Information about what this probe is targeting
Start Position of the probe relative to the 5' of the source transcript sequence
SEQUENCE Probe sequence
Definition Gene description from the source
Ontology GO annotations from Gene Ontology project: The GO term will be separated by ; and each term will have up to 4 informations: the GO categories follow by (go_function, go_process and go_component) the term itself follow by its id between brackets (ex [goid 5783]), the evidence code and eventually the litterature reference also between brackets (see the Gene Ontology Project website)
Synonym Gene symbol synonyms from Refseq
Data table ID Search_key Target Gid Transcript Accession GB_ACC Symbol Type Start SEQUENCE Definition Ontology Synonym 2100725
CSF3
GI_27437048-A
GI_27437048
GI_27437048
NM_172219.1
NM_172219.1 CSF3
A
1372
GACAGGAGGAATCATGTCAGGCCTGTGTGTGAAAGGAAGCTCCACTGTCA
Homo sapiens colony stimulating factor 3 (granulocyte) (CSF3), transcript variant 2, mRNA.
go_component: extracellular space [goid 0005615] [evidence E] [pmid 2420009]; go_function: granulocyte colony-stimulating factor receptor binding [goid 0005130] [evidence E] [pmid 2420009]; go_process: positive regulation of cell proliferation [goid 0008284] [evidence E] [pmid 2420009]; go_process: cell surface receptor linked signal transduction [goid 0007166] [evidence NR]; go_process: cellular defense response [goid 0006968] [evidence NR]; go_process: development [goid 0007275] [evidence E] [pmid 2420009]; go_process: cell-cell signaling [goid 0007267] [evidence NR]
GCSF;G-CSF;MGC45931
6980041
CHAT
GI_11038619-A
GI_11038619
GI_11038619
NM_020986.1
NM_020986.1 CHAT
A
1753
GGTTTGTCCTCTCCACTAGCCAGGTGCCCACAACCACGGAGATGTTCTGC
Homo sapiens choline acetyltransferase (CHAT), transcript variant N2, mRNA.
go_component: cytoplasm [goid 0005737] [evidence TAS] [pmid 10861222]; go_component: nucleus [goid 0005634] [evidence TAS] [pmid 10861222]; go_function: acyltransferase activity [goid 0008415] [evidence IEA]; go_function: choline O-acetyltransferase activity [goid 0004102] [evidence IEA]; go_function: transferase activity [goid 0016740] [evidence IEA]; go_process: synaptic transmission [goid 0007268] [evidence IEA]; go_process: neurotransmitter biosynthesis [goid 0042136] [evidence IEA]
FIMG2
6100619
RORA
GI_19743904-A
GI_19743904
GI_19743904
NM_134262.1
NM_134262.1 RORA
A
1562
AACCGAGACACTTTATATGGCCCTGCACAGACCTGGAGCGCCACACACTG
Homo sapiens RAR-related orphan receptor A (RORA), transcript variant 4, mRNA.
go_component: nucleus [goid 0005634] [evidence NR]; go_function: ligand-dependent nuclear receptor activity [goid 0004879] [evidence P] [pmid 7926749]; go_function: transcription activating factor [goid 0003710] [evidence E] [pmid 7926749]; go_function: steroid hormone receptor activity [goid 0003707] [evidence IEA]; go_function: transcription factor activity [goid 0003700] [evidence IEA]; go_process: signal transduction [goid 0007165] [evidence NR]; go_process: regulation of transcription, DNA-dependent [goid 0006355] [evidence IEA]
ROR1;ROR2;ROR3;RZRA;NR1F1
580037
RFC2
GI_31563535-A
GI_31563535
GI_31563535
NM_002914.3
NM_002914.3 RFC2
A
1445
ACGTCTGTGCCCCGCAAGTGTTTGAGTTTGGCCTCCACCCCATTGATGCG
Homo sapiens replication factor C (activator 1) 2, 40kDa (RFC2), transcript variant 2, mRNA.
go_component: DNA replication factor C complex [goid 0005663] [evidence TAS] [pmid 1313560]; go_component: nucleus [goid 0005634] [evidence IEA]; go_function: ATP binding [goid 0005524] [evidence TAS] [pmid 1313560]; go_function: DNA replication factor [goid 0003687] [evidence NR]; go_function: nucleotide binding [goid 0000166] [evidence IEA]; go_function: DNA binding [goid 0003677] [evidence IEA]; go_process: DNA replication [goid 0006260] [evidence IEA]
A1;RFC40;MGC3665
6200162
KCNN3
GI_25777649-A
GI_25777649
GI_25777649
NM_170782.1
NM_170782.1 KCNN3
A
1756
AGATGCACTGAAGTAGCCAACAGCGAAGCCAGTCCAGAAGAGGGGTCCGC
Homo sapiens potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3 (KCNN3), transcript variant 2, mRNA.
go_component: voltage-gated potassium channel complex [goid 0008076] [evidence E] [pmid 8781233]; go_component: membrane fraction [goid 0005624] [evidence NR]; go_function: calcium-activated potassium channel activity [goid 0015269] [evidence E] [pmid 8781233]; go_process: potassium ion transport [goid 0006813] [evidence E] [pmid 8781233]; go_process: synaptic transmission [goid 0007268] [evidence P] [pmid 8781233]; go_process: neurogenesis [goid 0007399] [evidence P]
SK3;hSK3;SKCA3;KCa2.3
3780064
RAI1
GI_23111012-A
GI_23111012
GI_23111012
NM_152256.1
NM_152256.1 RAI1
A
2886
TGGGCCCTACAGTGGGCACCGAGTCAAAGGTCCAGAGCTGGTTTGAGTCC
Homo sapiens retinoic acid induced 1 (RAI1), transcript variant 2, mRNA.
SMS;SMCR;KIAA1820;MGC12824;DKFZP434A139
6590348
PPM1B
GI_29558098-A
GI_29558098
GI_29558098
NM_177969.1
NM_177969.1 PPM1B
A
522
ATGGAGAAGTCTGGCGAGGAAGGAATGCCTGATCTTGCCCATGTCATGCG
Homo sapiens protein phosphatase 1B (formerly 2C), magnesium-dependent, beta isoform (PPM1B), transcript variant 3, mRNA.
go_component: protein serine/threonine phosphatase complex [goid 0008287] [evidence IEA]; go_function: protein phosphatase type 2C activity [goid 0015071] [evidence TAS] [pmid 9684878]; go_function: protein phosphatase type 2A activity [goid 0000158] [evidence IEA]; go_function: magnesium ion binding [goid 0000287] [evidence IEA]; go_function: calcium-dependent protein serine/threonine phosphatase activity [goid 0004723] [evidence IEA]; go_function: magnesium-dependent protein serine/threonine phosphatase activity [goid 0004724] [evidence IEA]; go_function: CTD phosphatase activity [goid 0008420] [evidence IEA]; go_function: hydrolase activity [goid 0016787] [evidence IEA]; go_function: myosin phosphatase activity [goid 0017018] [evidence IEA]; go_function: manganese ion binding [goid 0030145] [evidence IEA]; go_function: protein phosphatase type 2B activity [goid 0030357] [evidence IEA]; go_process: protein amino acid dephosphorylation [goid 0006470] [evidence TAS] [pmid 9684878]
PP2CB;MGC21657;PP2CBETA;PPC2BETAX;PP2C-beta-X
5270433
RAPSN
GI_38045927-A
GI_38045927
GI_38045927
NM_032645.3
NM_032645.3 RAPSN
A
1302
TCCTCGCCACTCCTGCTCTTTCTCCACTGCACGCCAGAGGCCCATTTACT
Homo sapiens receptor-associated protein of the synapse, 43kD (RAPSN), transcript variant 2, mRNA.
go_component: cytoskeleton [goid 0005856] [evidence IEA]; go_component: synaptic junction [goid 0045202] [evidence IEA]; go_process: synaptic transmission [goid 0007268] [evidence TAS] [pmid 8812503]
MGC3597
6590717
TEX14
GI_38327617-A
GI_38327617
GI_38327617
NM_031272.2
NM_031272.2 TEX14
A
4476
GGAATTGGATCATAGACGGACTCCTGGCCTGAGTTTGAGTGTCCTGGTTG
Homo sapiens testis expressed sequence 14 (TEX14), transcript variant 2, mRNA.
go_function: protein-tyrosine kinase activity [goid 0004713] [evidence IEA]; go_function: ATP binding [goid 0005524] [evidence IEA]; go_function: protein serine/threonine kinase activity [goid 0004674] [evidence IEA]; go_function: transferase activity [goid 0016740] [evidence IEA]; go_process: protein amino acid phosphorylation [goid 0006468] [evidence IEA]
6380167
CDKN2D
GI_17981701-A
GI_17981701
GI_17981701
NM_079421.1
NM_079421.1 CDKN2D
A
961
AGCCTAGAAGCTGGTGGCCTTGGCCGGCTGTGCTCAGAGACCTGAAGTGT
Homo sapiens cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) (CDKN2D), transcript variant 2, mRNA.
p19;INK4D;p19-INK4D
1780070
AP1GBP1
GI_18105001-A
GI_18105001
GI_18105001
NM_080551.1
NM_080551.1 AP1GBP1
A
2059
AAGATTTCACAAAACAGGACCTGCCTACGGCTGAACGGAGCCAGGAGGCC
Homo sapiens AP1 gamma subunit binding protein 1 (AP1GBP1), mRNA.
go_component: secretory vesicle membrane [goid 0005804] [evidence TAS] [pmid 10477754]; go_component: Golgi apparatus [goid 0005794] [evidence TAS] [pmid 10477754]; go_component: HA1 clathrin adaptor [goid 0005907] [evidence TAS] [pmid 10477754]; go_component: cytoplasm [goid 0005737] [evidence E] [pmid 10477754]; go_process: intracellular protein transport [goid 0006886] [evidence TAS] [pmid 10477754]
SYNG
130082
DYRK2
GI_5922002-A
GI_5922002
GI_5922002
NM_003583.2
NM_003583.2 DYRK2
A
3382
AGTACTTAAAAGCGTGGTCCCCAGTGAGGCCAAGAAAGTTTCCGGTTAAG
Homo sapiens dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2 (DYRK2), transcript variant 1, mRNA.
go_component: cytoplasm [goid 0005737] [evidence TAS] [pmid 9748265]; go_function: protein kinase activity [goid 0004672] [evidence E] [pmid 9748265]; go_function: protein-tyrosine kinase activity [goid 0004713] [evidence IEA]; go_function: ATP binding [goid 0005524] [evidence IEA]; go_function: protein serine/threonine kinase activity [goid 0004674] [evidence IEA]; go_function: transferase activity [goid 0016740] [evidence IEA]; go_process: protein amino acid phosphorylation [goid 0006468] [evidence TAS] [pmid 9748265]
2640072
GSN
GI_38044287-A
GI_38044287
GI_38044287
NM_198252.1
NM_198252.1 GSN
A
2311
GGGCTGGTTCCTTGGCTGGGATGATGATTACTGGTCTGTGGACCCCTTGG
Homo sapiens gelsolin (amyloidosis, Finnish type) (GSN), transcript variant 2, mRNA.
go_component: extracellular [goid 0005576] [evidence IDA] [pmid 3020431]; go_component: cytosol [goid 0005829] [evidence IDA] [pmid 3020431]; go_component: actin cytoskeleton [goid 0015629] [evidence TAS] [pmid 1321812]; go_component: cytoplasm [goid 0005737] [evidence NR]; go_function: barbed-end actin capping/severing activity [goid 0003784] [evidence TAS] [pmid 1321812]; go_function: actin filament severing activity [goid 0003789] [evidence IDA] [pmid 3020431]; go_function: calcium ion binding [goid 0005509] [evidence TAS] [pmid 1321812]; go_function: structural constituent of cytoskeleton [goid 0005200] [evidence IEA]; go_process: actin modification [goid 0007013] [evidence E]; go_process: actin filament polymerization [goid 0030041] [evidence IDA] [pmid 3020431]
5360164
MS4A6A
GI_23238233-A
GI_23238233
GI_23238233
NM_022349.2
NM_022349.2 MS4A6A
A
796
CTCTCTGATGCTGATTTGCACTCTGCTGGAATTCTGCCTAGCTGTGCTCA
Homo sapiens membrane-spanning 4-domains, subfamily A, member 6A (MS4A6A), transcript variant 2, mRNA.
go_component: integral to membrane [goid 0016021] [evidence IEA]; go_function: receptor activity [goid 0004872] [evidence IEA]
CDA01;MS4A6;4SPAN3;CD20L3;4SPAN3.2;MGC22650
2190097
FLJ22054
GI_33356129-A
GI_33356129
GI_33356129
NM_018527.2
NM_018527.2 FLJ22054
A
1105
GCACCCCAAAGCAATTACACCCAGAAGATTACCTTTGACTCTTGTCCCAG
Homo sapiens hypothetical protein FLJ22054 (FLJ22054), transcript variant 2, mRNA.
PRO2435;MGC40612
6620204
EFNA1
GI_33359679-A
GI_33359679
GI_33359679
NM_182685.1
NM_182685.1 EFNA1
A
1229
AGAGCTGTGCCAGCAGGGGGGCTGTGCCAACCTGTTCTTAGAGTGTAGCT
Homo sapiens ephrin-A1 (EFNA1), transcript variant 2, mRNA.
go_component: membrane [goid 0016020] [evidence IEA]; go_component: integral to plasma membrane [goid 0005887] [evidence TAS] [pmid 8660976]; go_function: transmembrane ephrin [goid 0005108] [evidence TAS] [pmid 8660976]; go_function: receptor binding [goid 0005102] [evidence TAS] [pmid 8660976]; go_function: ephrin receptor binding [goid 0046875] [evidence TAS]; go_process: cell-cell signaling [goid 0007267] [evidence TAS] [pmid 8660976]
B61;EFL1;ECKLG;EPLG1;LERK1;TNFAIP4
6400309
OPRL1
GI_33286425-A
GI_33286425
GI_33286425
NM_000913.3
NM_000913.3 OPRL1
A
3094
TTATGCATGTGGCAAGCGTTACTTCCTGTGCACGTAGCCAGCCCTGGGTC
Homo sapiens opiate receptor-like 1 (OPRL1), transcript variant 2, mRNA.
go_component: integral to plasma membrane [goid 0005887] [evidence TAS] [pmid 8137918]; go_function: G-protein coupled receptor activity [goid 0004930] [evidence E]; go_function: rhodopsin-like receptor activity [goid 0001584] [evidence IEA]; go_function: X-opioid receptor activity [goid 0015051] [evidence IEA]; go_process: G-protein signaling, adenylate cyclase inhibiting pathway [goid 0007193] [evidence TAS]; go_process: sensory perception [goid 0007600] [evidence TAS] [pmid 7566152]; go_process: G-protein coupled receptor protein signaling pathway [goid 0007186] [evidence IEA]
OOR;ORL1;KOR-3;NOCIR;MGC34578
540731
PKNOX1
GI_37595550-A
GI_37595550
GI_37595550
NM_197976.1
NM_197976.1 PKNOX1
A
2589
TGTCCAGAGGGGGTTCTGCCCCTTGTGAAGGCCCATTCCTGGCACTTAGA
Homo sapiens PBX/knotted 1 homeobox 1 (PKNOX1), transcript variant 2, mRNA.
go_function: specific RNA polymerase II transcription factor activity [goid 0003704] [evidence P] [pmid 9479508]; go_function: transcription factor activity [goid 0003700] [evidence P] [pmid 9143494]
PREP1
2120528
AGTR1
GI_14043065-A
GI_14043065
GI_14043065
NM_032049.1
NM_032049.1 AGTR1
A
1934
CTACTTGTAAAGGTGCTGCACTGGTCCCAAGTAGTAGTGTCCTCCTAGTA
Homo sapiens angiotensin II receptor, type 1 (AGTR1), transcript variant 5, mRNA.
go_component: integral to plasma membrane [goid 0005887] [evidence P] [pmid 1378723]; go_component: plasma membrane [goid 0005886] [evidence E] [pmid 1378723]; go_function: angiotensin type II receptor activity [goid 0004945] [evidence E] [pmid 8135787]; go_process: cytosolic calcium ion concentration elevation [goid 0007204] [evidence E] [pmid 1567413]; go_process: G-protein signaling, coupled to IP3 second messenger (phospholipase C activating) [goid 0007200] [evidence E] [pmid 1378723]; go_process: fluid secretion [goid 0007589] [evidence NR]; go_process: G-protein coupled receptor protein signaling pathway [goid 0007186] [evidence P] [pmid 1550596]; go_process: circulation [goid 0008015] [evidence NR]
AT1;AG2S;AT1B;AT2R1;HAT1R;AGTR1A;AGTR1B;AT2R1A;AT2R1B
2680609
MRPL39
GI_27886581-A
GI_27886581
GI_27886581
NM_017446.2
NM_017446.2 MRPL39
A
434
GGCATATTGGCGTTCCTGTGCTATGATGATGGGCTGTGTGATAGAGAGGG
Homo sapiens mitochondrial ribosomal protein L39 (MRPL39), nuclear gene encoding mitochondrial protein, transcript variant 1, mRNA.
go_component: mitochondrial ribosome [goid 0005761] [evidence NAS] [pmid 11167009]; go_component: mitochondrion [goid 0005739] [evidence IEA]; go_function: structural constituent of ribosome [goid 0003735] [evidence IEA]; go_function: molecular_function unknown [goid 0005554] [evidence ND]; go_process: biological_process unknown [goid 0000004] [evidence ND]
L39mt;RPML5;MRP-L5;PRED22;PRED66;MGC3400;C21orf92;FLJ20451
24385 10326 Kbytes .Supplementary file Size Download File type/resource GPL6098_Illumina_Human_RefSeq-8_V1.csv.gz
2.5 Mb
(ftp) (http) CSV
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