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Status
Public on Nov 19, 2007
Title
CATMA_CIG_Arabidopsis_25K_V1
Technology type
mixed spotted oligonucleotide/cDNA
Distribution
non-commercial
Organism
Arabidopsis thaliana Manufacturer
DNA Array Facility, Center for Integrative Genomics, Genopode, University of Lausanne
Manufacture protocol
The Arabidopsis thaliana microarray contains gene specific tags (GSTs) that have been designed by the Complete Arabidopsis Transcriptome MicroArray Project (CATMA Project). As described on the CATMA project webpage, the probes spotted on the array are collection consisting primarily of PCR products but also including oligonucleotids. The spotting buffer is 3xSSC 1,5M betaïne, the spotting robot is a GeneMachines OmniGrid300. DNA was spotted on aldehyde slides.
Support
glass
Coating
other
Web link
http://www.unil.ch/dafl Submission date
Nov 16, 2007
Last update date
Nov 19, 2007
Contact name
Keith Harshman
E-mail(s)
keith.harshman@unil.ch Phone
41-21-692-3906
Fax
41-21-692-3905
URL
http://www.unil.ch/dafl Organization name
University of Lausanne
Department
Center for Integrative Genomics
Lab
DNA Array Facility
Street address
Genopode Building
City
Lausanne
ZIP/Postal code
1015
Country
Switzerland
Samples (40)
GSM343300 , GSM343301 , GSM343302 , GSM343303 , GSM343304 , GSM343305
GSM343306 ,
GSM343307 ,
GSM343308 ,
GSM343309 ,
GSM343310 ,
GSM343311 ,
GSM343312 ,
GSM343313 ,
GSM343314 ,
GSM343315 ,
GSM343316 ,
GSM343317 ,
GSM343318 ,
GSM343319 ,
GSM343320 ,
GSM343321 ,
GSM343322 ,
GSM343323 ,
GSM343324 ,
GSM343325 ,
GSM343326 ,
GSM343327 ,
GSM343328 ,
GSM343329 ,
GSM343330 ,
GSM343331 ,
GSM343332 ,
GSM343333 ,
GSM413083 ,
GSM413084 ,
GSM545492 ,
GSM545493 ,
GSM545494 ,
GSM545495 Series (2)
GSE13628 Comprehensive analysis of Arabidopsis expression level polymorphisms with simple inheritance
GSE16434 Analysis of gene expression in Arabidopsis thaliana after priming with BABA and infection with Pseudomonas syringae pv tomato DC3000
Data table header descriptions ID ORF Locus tag
AGI_NUMBER TAIR identifier for a locus in the Arabidopsis genome
SPOT_ID CATMA consortium identifier for each gene specific tag
CONTROL Amersham Lucidea Universal Scorecard and Intergenic control GST according to TIGR 5.0
SEQUENCE nuclotide sequence of printed oligos
Data table ID ORF AGI_NUMBER SPOT_ID CONTROL SEQUENCE CATMA1a00010
At1g01010 At1g01010
CATMA1a00010
CATMA1a00020
CATMA1a00020
CATMA1a00030
At1g01030 At1g01030
CATMA1a00030
CATMA1a00035
At1g01040 At1g01040
CATMA1a00035
CATMA1a00040
At1g01050 At1g01050
CATMA1a00040
CATMA1a00045
At1g01060 At1g01060
CATMA1a00045
CATMA1a00050
At1g01070 At1g01070
CATMA1a00050
CATMA1a00060
At1g01080 At1g01080
CATMA1a00060
CATMA1a00070
At1g01090 At1g01090
CATMA1a00070
CATMA1a00080
At1g01100 At1g01100
CATMA1a00080
CATMA1a00090
CATMA1a00090
CATMA1a00090_bis
CATMA1a00090
CATMA1a00100
At1g01110 At1g01110
CATMA1a00100
CATMA1a00110
At1g01120 At1g01120
CATMA1a00110
CATMA1a00130
At1g01140 At1g01140
CATMA1a00130
CATMA1a00140
At1g01150 At1g01150
CATMA1a00140
CATMA1a00150
At1g01170 At1g01170
CATMA1a00150
CATMA1a00160
At1g01170 At1g01170
CATMA1a00160
CATMA1a00170
At1g01180 At1g01180
CATMA1a00170
CATMA1a00180
At1g01190 At1g01190
CATMA1a00180
24966 1176 Kbytes .Supplementary data files not provided
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