NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL6272 Query DataSets for GPL6272
Status Public on Mar 31, 2009
Title Escherichia coli O157:H7 EDL933 Spotted PCR Array
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Escherichia coli O157:H7 str. EDL933
Manufacturer Chris Minion Laboratory at Iowa State University
Manufacture protocol The Escherichia coli O157:H7 EDL933 microarray consists of PCR products (100-500 bp) spotted to Corning UltraGAPS™ substrates. Each probe was printed in duplicate, in non-adjacent spots to reduce non-uniform substrate errors in replicated probes. The array consisted of 48 subarrays, with a 15-column x 15-row configuration.
Support glass
Coating aminosilane
 
Description Corning UltraGAPS substrates (catalog #40016)
 
Contributor(s) Minion C, Madsen ML
Submission date Dec 12, 2007
Last update date Mar 31, 2009
Contact name Chris Minion
E-mail(s) fcminion@iastate.edu
Phone 515-294-6347
Fax 515-294-8500
Organization name Iowa State University
Department VMPM
Street address 1130 Vet Med
City Ames
State/province IA
ZIP/Postal code 50011
Country USA
 
Samples (36) GSM288813, GSM288814, GSM288927, GSM288928, GSM288930, GSM288931 
Series (4)
GSE11463 Transcriptome analysis of Escherichia coli O157:H7 EDL933 during heat shock using microarrays
GSE13301 Transcriptome analysis of Escherichia coli O157:H7 EDL933 during anaerobic growth using microarrays
GSE16747 Transcriptome analysis of Escherichia coli O157:H7 EDL933 during rumen fluid exposure using microarrays

Data table header descriptions
ID unique open reading frame identifier
Lprimer Forward or Left primer used in amplification of DNA for spotting
Rprimer Reverse or Right primer used in amplification of DNA for spotting
Size size of product from primers that was spotted on array
GENOME_ACC Genbank or Refseq accession
SEQUENCE sequence of PCR product spotted on array
ORF locus tag

Data table
ID Lprimer Rprimer Size GENOME_ACC SEQUENCE ORF
aas GCTTCTCCACCCGCAGATAG CACCGTGTTGTTCGGCAC 350 AE005174 GCTTCTCCACCCGCAGATAGCCGTTCATTATGTTCGGCCCTTTCAGTTGCAGGCGTCCGCCYTCTTCGATACCAGGGACCGACAACAGGCGCGCATCCATTCCTGGTAGAATACGCCCTACCGTACCGGGTTTCGCCGCCATCGGTACGTTGATAGAAACGACAGGCGCGCATTCGGTCACACCGTAGCCTTCAAGGATGCGCAGGCCAAATTTATCCTGCCAAAGCTGTTTGGTACTTTCTTGTAGTTTTTCTGCGCCTGCCACCACATAGCGTAGACGATAGAAGTCATACGGGTTGGCGAAACGCGCGTAGTGACCGAGGAAAGTCGAAGTGCCGAACAACACGGTG aas
aat ATGGTAGGCTTCGACCACG CACTTGGGGGCGATCTTAG 281 AE005174 ATGGTAGGCTTCGACCACGCCACGCGTGATCCAGGTTCCTTCTTCGCGATCGCTGGCACAGCCTTCAATGACCTGACCAAAAGCGTAATTCATCGTGACACGATAGGGCGAGCGTTTATGAAATCGCTTCATACTACGGCTGATATGCAGTGATTCTGGCCATAGCACCGCGCGGGGATCGGGCGACCACCAGAGGATGGGGTCGCCTGGAGAAAACCACGGAAAAATACCACGCTGGTAAGCCATTAACAGGCGCGCAGGGCTAAGATCGCCCCCAAGTG aat
abc CATGGTGTTCCTGCAGCC TCTCACATCCGAAAACGC 318 AE005174 CATGGTGTTCCTGCAGCCAGGCAATGGCGGCTTGCGTATCTTGTTGTGTGCCGTGCATTTCAGTCAGCATGATGCCGAACTTAACGCCACCGGCGTAATCCATCTGCGCGCTAATAATGTTGTTGTTGACGTTGAAACGACGCGCGGTTTCAGAAAGCAGTGGGGCATCGACCGATTGACCGGTAAACTCCAGACGCAGCATCGGCACGCAGTCAGTAAATGGCTCCGCTTGCAGACGTTCCTGGTAATCTTCCGGGATATCCAGATGCAGGGTTGACTGAATAAACTTCTGCGCCAGCGGCGTTTTCGGATGTGAGA abc
abrB TAAACCGGGTCAGTCCCC GCCGGTACAGTGGGATGC 274 AE005174 TAAACCGGGTCAGTCCCCACGCCATACCCGCACAAATAGCCAGCAGAGCAAAAATCGACAGCAGGATTTGTGGTAGCGGGCGTAGTGCCCGCAGTAAGATTTGTTTATCGAAACCAAGGCCAATCCGCCAGCCAATTGCCATATACGCCATCGCCAGTAGCCATTCCGGTAGTTCGATGGTGATGAGCTGACCAGACTGGAGCACTGCGCCCGCCAGCATCGGGATGAGCATCGTGCCGGAAGGAAGACGCAGCAGGCATCCCACTGTACCGGC abrB
accA CGTGAAATGTCTCGCCTC GCAGTTGCGCTTTCAACG 316 AE005174 CGTGAAATGTCTCGCCTCGGCGTACCGGTAGTTTGTACGGTTATCGGTGAAGGTGGTTCTGGCGGTGCGCTGGCGATTGGCGTGGGCGATAAAGTGAATATGCTGCAATACAGCACCTATTCCGTTATCTCGCCGGAAGGTTGTGCGTCCATTCTGTGGAAGAGCGCCGACAAAGCGCCGCTGGCGGCTGAAGCGATGGGTATCATCGCTCCGCGTCTGAAAGAGCTGAAACTGATCGACTCCATCATCCCGGAACCGCTGGGCGGCGCTCACCGTAACCCGGAAGCGATGGCGGCATCGTTGAAAGCGCAACTGC accA
accB TGTGATGCAACAAGCTTACG GGTACCGGATTTGTCCGC 277 AE005174 TGTGATGCAACAAGCTTACGCTGCACCAATGATGCAGCAGCCAGCTCAATCTAACGCAGCCGCTCCGGCGACCGTTCCTTCCATGGAAGCGCCAGCAGCAGCGGAAATCAGTGGTCACATCGTACGTTCCCCGATGGTTGGTACTTTCTACCGCACCCCAAGCCCGGATGCAAAAGCGTTCATCGAAGTGGGTCAGAAAGTCAACGTGGGCGATACCCTGTGCATCGTTGAAGCCATGAAAATGATGAACCAGATCGAAGCGGACAAATCCGGTACC accB
accC GTCTGTATTGGCCCTGCTCC GCGTTTAGCAATGGCACG 309 AE005174 GTCTGTATTGGCCCTGCTCCGTCAGTAAAAAGTTATCTGAACATCCCGGCAATCATCAGCGCCGCTGAAATCACCGGCGCAGTAGCAATCCATCCGGGTTACGGCTTCCTCTCCGAGAACGCCAACTTTGCCGAGCAGGTTGAACGCTCCGGCTTTATCTTCATTGGCCCGAAAGCAGAAACCATTCGCCTGATGGGCGACAAAGTATCCGCAATCGCGGCGATGAAAAAAGCGGGCGTCCCTTGCGTACCGGGTTCTGACGGCCCGCTGGGCGACGATATGGATAAAAACCGTGCCATTGCTAAACGC accC
accD ACAACAGACCCCATTGAACC GGTCTGTCCGAAGTGTGACC 282 AE005174 ACAACAGACCCCATTGAACCGCCCATAAAGGCGAACTCGAATGCCGCAGCGACAACCGGCATTCCATACAGAGTGCCTTTCATCACCACCAGCGCATCTTTTTCGCCGGTTTCTTTCTGCGCAGATGCCAGACGGTCTTTATACTTCTTGGAGTCACGAAACTTCAGCACATCTTTCGGCTCAAGCTCGCTACCCAGCTCCACAAGGCTTCCTTCATCTAACAGGCTATGCAGGCGATTACGCGCTGTCATACGCATGTGATGGTCACACTTCGGACAGACC accD
aceA TATGGTGTGAAACCTCCACG TGCTTCATACCCTCGCCC 274 AE005174 TATGGTGTGAAACCTCCACGCCGGATCTGGAACTGGCGCGTCGCTTTGCGGAAGCTATCCACGCGAAATATCCGGGCAAACTGCTGGCTTATAACTGCTCGCCGTCGTTCAACTGGCAGAAAAACCTCGACGACAACACTATTGCCAGCTTCCAGCAGCAGCTGTCGGATATGGGCTACAAGTTCCAGTTCATCACCCTGGCAGGTATCCACAGCATGTGGTTCAACATGTTTGATCTGGCAAACGCCTATGCCCAGGGCGAGGGTATGAAGCA aceA
aceB CCGATTTCGAAGATTCACTG ATAGGGACCACTGCCCTTTG 284 AE005174 CCGATTTCGAAGATTCACTGGCACCAGACTGGAACAAAGTGATCGACGGGCAAATTAACCTGCGTGATGCGGTTAACGGCACCATCAGTTACACCAATGAAGCAGGCAAAATTTACCAGCTCAAGCCCAATCCAGCGGTTTTGATTTGTCGGGTACGCGGTCTGCACTTGCCGGAAAAACATGTCACCTGGCGTGGTGAGGCAATCCCCGGCAGCCTGTTTGATTTTGCGCTCTATTTCTTCCACAACTATCAGGCACTGTTGGCAAAGGGCAGTGGTCCCTAT aceB
aceE GTTTACGCGTTCCTCGGC GTTCACGAACGTACGCACC 337 AE005174 GTTTACGCGTTCCTCGGCGACGGTGAAATGGACGAACCGGAATCCAAAGGTGCGATCACCATCGCTACCCGTGAAAAACTGGATAACCTGGTCTTCGTTATCAACTGTAACCTGCAGCGTCTTGACGGCCCGGTCACCGGTAACGGCAAGATCATCAACGAACTGGAAGGTATCTTCGAAGGTGCTGGCTGGAACGTGATCAAAGTGATGTGGGGTAGCCGTTGGGATGAACTGCTGCGTAAAGATACCAGCGGTAAACTGATCCAGCTGATGAACGAAACCGTTGACGGCGACTACCAGACCTTCAAATCGAAAGATGGTGCGTACGTTCGTGAAC aceE
aceF CAGGCGTCGTGAAGGAAC CAAACTCGCGTGCCAGAC 258 AE005174 CAGGCGTCGTGAAGGAACTGAAAGTCAACGTTGGCGATAAAGTGAAAACTGGCTCGCTGATTATGATCTTCGAAGTTGAAGGCGCAGCGCCTGCGGCAGCTCCTGCGAAACAGGAAGCAGCAGCGCCGGCTCCGGCAGCAAAAGCTGAAGCCCCGGCAGCAGCACCGGCTGCGAAAGCGGAAGGCAAATCTGAATTTGCTGAAAATGACGCTTACGTTCACGCGACCCCGCTGATCCGCCGTCTGGCACGCGAGTTTG aceF
aceK TCGACGCTCAGTATGGTCG GCGAGCGGTGGTCAAATAAC 297 AE005174 TCGACGCTCAGTATGGTCGATTCCTCGAAGTGACTTCCGGGGCGCAGCAGCGTTTCGAACAAGCCGACTGGCATGCTGTCCAGCAGGCGATGAAAAACCGTATCCATCTTTACGATCATCACGTTGGTCTGGTCGTGGAGCAACTGCGCTGCATTACCAACGGCCAAAGCACGGACGCGGAATTTTTACTGCGCGTCAAAGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGC aceK
ackA CCAAAGAGTCTGGCCTGC GGACGGGTACCTTCTTTG 325 AE005174 CCAAAGAGTCTGGCCTGCTGGGTCTGACCGAAGTGACCAGCGACTGCCGCTATGTTGAAGACAACTACGCGACGAAAGAAGACGCGAAGCGCGCAATGGACGTTTACTGCCACCGCCTGGCGAAATACATCGGTGCCTACACTGCGCTGATGGATGGTCGTCTGGACGCTGTTGTATTCACCGGTGGTATCGGTGAAAATGCCGCGATGGTCCGTGAACTGTCTCTGGGCAAACTGGGCGTGCTGGGCTTTGAAGTTGATCATGAACGCAATCTGGCTGCACGTTTCGGCAAATCTGGTTTCATCAACAAAGAAGGTACCCGTCC ackA
acnA GAGAACCAGGTCTGTGGCG AAGCAAGCGTTCAGTCGG 318 AE005174 GAGAACCAGGTCTGTGGCGGTAATACCTTCACGTAATTTTCCGGTAAGTTTAAAGCCCACTACGTCCGGGATAAGCATGGAAACCGGCTGGCCTAACATTGCGGCTTCTGCTTCGATGCCACCCACGCCCCACCCCAGCACGCCAAGGCCGTTGATCATAGTGGTGTGCGAGTCAGTACCAACGAGTGTATCCGGATAAGCAATCCATTCACCGTCCTGCAATTCGCTCCACACTGCTTTGCCGAGATATTCGAGGTTAACCTGATGGCAAATGCCTGTGCCTGGCGGCACGACGCTAAACCGACTGAACGCTTGCTT acnA
acnB GAGCCAATCCTCTGTGCTCC CGGGAAGTTACGGGTAGAGG 348 AE005174 GAGCCAATCCTCTGTGCTCCGAACGACCCGGACGACGCACGTCCGCTGTCTGCGGTACAGGGCGAGAAGATCGACGAAGTGTTTATCGGTTCTTGCATGACTAACATCGGTCACTTCCGTGCCGCAGGTAAACTGCTGGATGCGCACAAAGGTCAGTTGCCGACCCGCCTGTGGGTGGCACCGCCAACCCGTATGGACGCCGCACAGTTGACCGAAGAAGGCTACTACAGCGTCTTCGGTAAGAGTGGTGCGCGTATCGAGATCCCTGGCTGTTCCCTGTGTATGGGTAACCAGGCGCGTGTGGCGGACGGTGCAACGGTGGTTTCCACCTCTACCCGTAACTTCCCG acnB
acpD CCGGAAGGTCTGGTAACG ACGTGGACAGATACGGCG 103 AE005174 CCGGAAGGTCTGGTAACGGGTAAAAAAGCCATCGTTATTACCAGCCGCGGTGGGATCCACAAAGATGGACCAACGGACCTGGTGACGCCGTATCTGTCCACGT acpD
acpP TGAGCACTATCGAAGAACGC ACCAGCTCAACGGTGTCAAG 130 AE005174 TGAGCACTATCGAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGACCTAGGCGCGGATTCTCTTGACACCGTTGAGCTGGT acpP
acpS CGTGGCACAAGCATAGTGG TCGTAGAGATCGCTCGCATAG 335 AE005174 CGTGGCACAAGCATAGTGGCGCTCATCGGCCAGCGTCACATGCATATTTGCAACGCCCAGCTTTTCCGCCMGTTTTAATGCCTCGCCCCACAGTCGCAGCCGTGGCTTACCAAGCTCATCGTTAAATACTTCAAACTGATTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTTACGGCAAAGCGTTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAAATTTCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGCTCACCGGATCGGGCGATCACTGCTTCTATGCGAGCGATCTCTACGA acpS
acrA TTCGACTTACCAATGCGACC TCGAAGCAGGTGTCTCTCTC 304 AE005174 TTCGACTTACCAATGCGACCGCTAATCGGAGAGGTGACTTTGGTGTAAGCCAGATTGATCCGCGCAGTTTCAACGGCAGCTTTCGCCGCAGTTACCGCAGCATTCGCCTGTTGCGCATCAGCCAGAGCCTGATCGTACTCTTGCTTACTGATGTACTGAGTACCGAGCAGTTTCTGATAACGATTCACCGTCAATTGCGCGATATTGGCTGCAGCCTGGGCTTTCGCCAGATCACCTTTCGCACTGTCGTATGTCGCCTGATAGGTCGCAGGATCAATCTGATAGAGAGAGACACCTGCTTCGA acrA

Total number of rows: 4761

Table truncated, full table size 1562 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap