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| Status |
Public on Jan 15, 2008 |
| Title |
Lactobacillus plantarum WCFS1_LpGn 3K DNA array |
| Technology type |
spotted DNA/cDNA |
| Distribution |
non-commercial |
| Organism |
Lactiplantibacillus plantarum WCFS1 |
| Manufacturer |
Department of Molecular Genetics, university of Groningen, the Netherlands |
| Manufacture protocol |
See Van Hijum et al, 2005, PMID: 15907200 and Hendriksen et al, 2006, PMID: 17085554
|
| Support |
glass |
| Coating |
aminosilane |
| |
|
| Description |
Lactobacillus plantarum LpGn
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| |
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| Contributor(s) |
Stevens M, Molenaar D, Kleerebezem M, De Jong A, Kuipers O |
| Submission date |
Jan 14, 2008 |
| Last update date |
Jan 15, 2008 |
| Contact name |
Douwe Molenaar |
| E-mail(s) |
douwe.molenaar@falw.vu.nl
|
| Organization name |
Vrije Universiteit Amsterdam
|
| Department |
Systems Bioinformatics
|
| Street address |
De Boelelaan 1085
|
| City |
Amsterdam |
| ZIP/Postal code |
1081 HV |
| Country |
Netherlands |
| |
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| Samples (38)
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GSM257475, GSM257476, GSM257477, GSM257478, GSM286744, GSM286745
GSM286746, GSM286747, GSM286748, GSM286749, GSM286750, GSM286751, GSM286752, GSM286753, GSM591375, GSM591376, GSM591377, GSM591378, GSM591379, GSM591380, GSM591381, GSM591382, GSM591383, GSM591384, GSM591385, GSM591386, GSM591387, GSM591388, GSM591389, GSM591390, GSM593121, GSM593122, GSM593123, GSM593124, GSM593125, GSM593126, GSM593127, GSM593128
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| Series (4)
|
| GSE10194 |
Improvement of Lactobacillus plantarum Aerobic Growth by Comprehensive Transcriptome Analysis |
| GSE11351 |
Peroxide stress in Sigma54 mutant and Wt |
| GSE24021 |
CcpA regulon in L. plantarum |
| GSE24098 |
Sugar utilization in L. plantarum WCFS1 |
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| Data table header descriptions |
| ID |
|
| PROBE_ID |
Amplicon identifier |
| SPOT_ID |
spot identifier for controls, failed PCRs, buffer |
| PCR_FAILURE |
Indicates failure type of amplicon PCR |
| ORF |
Probe target open reading frame; locus tag |
| AMPLICON_LENGTH |
Length of amplicon |
| BLOCK |
Array spot block |
| ROW |
Spot row within array spot block |
| COLUMN |
Spot column within array spot block |
| Data table |
| ID |
PROBE_ID |
SPOT_ID |
PCR_FAILURE |
ORF |
AMPLICON_LENGTH |
BLOCK |
ROW |
COLUMN |
| 1 |
lp_2315 |
|
|
lp_2315 |
750 |
1 |
1 |
1 |
| 2 |
|
BUFFER_spotbuffer |
|
|
|
1 |
1 |
2 |
| 3 |
lp_2350 |
|
|
lp_2350 |
751 |
1 |
1 |
3 |
| 4 |
lp_1954 |
|
|
lp_1954 |
718 |
1 |
1 |
4 |
| 5 |
lp_1921 |
|
|
lp_1921 |
754 |
1 |
1 |
5 |
| 6 |
lp_1888 |
|
|
lp_1888 |
673 |
1 |
1 |
6 |
| 7 |
lp_1748 |
|
|
lp_1748 |
748 |
1 |
1 |
7 |
| 8 |
lp_1356 |
|
|
lp_1356 |
744 |
1 |
1 |
8 |
| 9 |
lp_1322#missing |
--missing:lp_1322 |
missing |
|
483 |
1 |
1 |
9 |
| 10 |
|
CONTROL_cYIR08 |
|
|
|
1 |
1 |
10 |
| 11 |
lp_0977 |
|
|
lp_0977 |
736 |
1 |
1 |
11 |
| 12 |
lp_0939 |
|
|
lp_0939 |
747 |
1 |
1 |
12 |
| 13 |
lp_0904 |
|
|
lp_0904 |
716 |
1 |
1 |
13 |
| 14 |
lp_0869 |
|
|
lp_0869 |
491 |
1 |
1 |
14 |
| 15 |
lp_0348 |
|
|
lp_0348 |
745 |
1 |
1 |
15 |
| 16 |
lp_0316 |
|
|
lp_0316 |
745 |
1 |
1 |
16 |
| 17 |
lp_0286 |
|
|
lp_0286 |
749 |
1 |
1 |
17 |
| 18 |
|
CONTROL_cYIR04 |
|
|
|
1 |
1 |
18 |
| 19 |
lp_2318 |
|
|
lp_2318 |
752 |
1 |
2 |
1 |
| 20 |
lp_2278 |
|
|
lp_2278 |
746 |
1 |
2 |
2 |
Total number of rows: 6912
Table truncated, full table size 236 Kbytes.
| Supplementary data files not provided |
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