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Status
Public on Jan 19, 2008
Title
ISQ Chip Folsomia candida Collembola VU version 1.0
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Folsomia candida Manufacturer
Agilent
Manufacture protocol
60-mer oligo probes were designed from Collembase EST contigs, using OligoArray v2.0 and synthesized in situ by an ink-jet printing (Agilent) method on glass slides.
Support
glass
Description
2*11K format. In total 5,131 different experimental probes representing 5,112 EST contigs are in duplicate on the microarray.
Contributor(s)
Nota B Submission date
Jan 17, 2008
Last update date
Jan 19, 2008
Contact name
Benjamin Nota
E-mail(s)
benjamin.nota@gmail.com Phone
+31 (0)20-5123787
Organization name
Sanquin
Department
Research Facilities
Street address
Plesmanlaan 125
City
Amsterdam
State/province
Noord Holland
ZIP/Postal code
1066 CX
Country
Netherlands
Samples (32)
GSM280604 , GSM280605 , GSM280606 , GSM280607 , GSM280608 , GSM280609
GSM280610 ,
GSM280611 ,
GSM280612 ,
GSM280613 ,
GSM280614 ,
GSM280615 ,
GSM402519 ,
GSM403390 ,
GSM403443 ,
GSM403448 ,
GSM403449 ,
GSM403450 ,
GSM403452 ,
GSM403453 ,
GSM403454 ,
GSM403455 ,
GSM403492 ,
GSM403522 ,
GSM403542 ,
GSM403543 ,
GSM403544 ,
GSM403545 ,
GSM425830 ,
GSM425831 ,
GSM425832 ,
GSM425833 Series (3)
GSE11122 Folsomia candida exposed to cadmium spiked soil
GSE16127 Sugar sweet springtails: On the transcriptional response of Folsomia candida (Collembola) towards desiccation stress
GSE17024 Gene expression microarray analysis of heat stress in the soil invertebrate Folsomia candida
Data table header descriptions ID Row Row index on the array
Col Column index on the array
SEQUENCE Oligo sequence
ControlType Agilent control probes; 1=positive control; -1=negative control; 0= not control (experimental) probe
ProbeName Name of probe
GeneName Name as can be found in Collembase (www.collembase.org)
GB_LIST Accession numbers of all sequences of the EST contig
BlastHit Best hit met Blast homology followed by E-value
SPOT_ID
Data table ID Row Col SEQUENCE ControlType ProbeName GeneName GB_LIST BlastHit SPOT_ID 1
1
1
1
BrightCorner
BrightCorner
-- Positive Control
2
1
2
-1
(-)3xSLv1
NegativeControl
-- Negative Control
3
1
3
AATTATAAAAAGCGTAATTATCCAGACAAGACAACCGTCCAGTTTGGCATGTATCTCATC
0
Fcc00279C1
Fcc00279
EV476973,EV479264 gb|ABA60385.1| nicotinic acetylcholine receptor subunit type F [... 139 1e-31
4
1
4
TGTATGTATGATACTGTAAACATGTTTAGAATATCCGAACCTGTCACACGAACTACTACT
0
Fcc01202C1
Fcc01202
EV475631,EV480906,EV480967 No hits found
5
1
5
CATGTAACGTGACTACTTCACAACGGATAATCTCTCAAGAGTGTTGTATTTATAATCTAC
0
Fcc00276
Fcc00276
EV476453 No hits found
6
1
6
CACTCATCGCTTGAGATTGGTGACATCCTTCAAAGTTTGGACATAATTAATTTTAAGTTG
0
Fcc05633
Fcc05633
EV480058 ref|XP_624282.1| PREDICTED: similar to von Hippel-Lindau binding... 88 2e-16
7
1
7
CCTGGTCTATTTGAACAGCAGGTACAGAATAAAGAATTTAAAGTAGCTACTGGGAATATT
0
Fcc05657
Fcc05657
EV477673 No hits found
8
1
8
1
(+)Pro25G-02
Pro25G
-- Positive Control
9
1
9
CAATCATTCAGTTTTCAACTGTGAAGAGTTCTAGCCGTTTCAGTACGATTGAGTACATTG
0
Fcc02439C1
Fcc02439
EV475501,EV481479 No hits found
10
1
10
AGGATCAGAAACATTTCCATTTATGCAGTCAAACAAACATTGTGACCAAGTTTTGTCTTC
0
Fcc05892
Fcc05892
EV480520 No hits found
11
1
11
AATTTTAGAGCTCTTTAAAACGCGATGACAATAAAAGCACGGAAATTTGTTCTGCGTAAC
0
Fcc05093C1
Fcc05093
EV475743,EV476747 ref|XP_394852.2| PREDICTED: similar to ENSANGP00000012490 [Apis ... 183 7e-45
12
1
12
CCGGTTTATATATGTGAGTAGATACAAGATATAATAGGGGTGCGTGACATATATCTATCA
0
Fcc04173
Fcc04173
EV480537 No hits found
13
1
13
GATGAAATCCATCGGAAAATTGAACAAAAATAATTAAGGACCAAAAACTGAGGTGGGTTG
0
Fcc04892
Fcc04892
EV481321 No hits found
14
1
14
GAATGACGCGTAATACTTATCATGAAAGGAATAATTGTATCATGAATGGCTGCTCATGTT
0
Fcc04448C1
Fcc04448
EV473954,EV475087 No hits found
15
1
15
1
(+)Pro25G-02
Pro25G
-- Positive Control
16
1
16
ATTCTTGACTGATCAACAAGTTCTAGATAAGGGTGTGGACCGACAAAGTTATCAATACTC
0
Fcc00480
Fcc00480
EV478914 gb|AAO79003.1| TonB [Bacteroides thetaiotaomicron VPI-5482] >gi|... 129 5e-29
17
1
17
TATTTATTCGTCCTTCAGAGTACTTCAGACTATAGATTCGGAGGCTTTTGTATTTGCTCA
0
Fcc04063
Fcc04063
EV475253 No hits found
18
1
18
GTTTTCACTTCTGTGTTCATCTATGAACTATGTATTGGCCAATTTTCTATCCGTGTTTGA
0
Fcc04951
Fcc04951
EV480551 No hits found
19
1
19
TTAAGAGAAAAACTGGGCTCATTCGGAGTTACGAATAAATTTAAGGTATATCAAGGTGGG
0
Fcc01425
Fcc01425
EV479808 ref|ZP_00950895.1| probable lipase [Croceibacter atlanticus HTCC... 48 1e-04
20
1
20
CTAAATGATCTCATAGTTAGAAGTCGCTCAAGTAACGTGGAGTCACATGATCGTATTCTC
0
Fcc02803
Fcc02803
EV473853 No hits found
10806 1551 Kbytes .Supplementary data files not provided
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