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Platform GPL6416 Query DataSets for GPL6416
Status Public on Jan 25, 2008
Title Hofmann A. burtoni 16K brain_pinky_array_print4
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Haplochromis burtoni
Manufacturer Hofmann
Manufacture protocol This array is built primarily from two Cichlid cDNA libraries. Library 1: Brain2000 was made in the lab of Russ Fernald using brains from all sexes, stages, and phenotypes. Library 2: Pinky2003 was made by Walter Salzburger using mixed tissues including gonads, liver, skin, muschle from all stages. this library was normalized Both libraries represent Astatotilapia burtoni Colony picking, PCR amplification, and array printing have been done at Harvard's Bauer Center for Genomics Research in the lab of Hans Hofmann. the array also includes candidate genes cloned in the Hofmann and Fernald labs as well as yeast control genes and a few other positive and negative controls
Support glass
Coating polysine
Description synonym: Astatotilapia burtoni
the array consists of 48 blocks (4#12) of 400 spots each (20X20)
the physical array contains an adition set of yeast control features that are not included in the GEO platform
Contributor(s) Renn SC, Hofmann HA, Salzburger W
Submission date Jan 24, 2008
Last update date Jul 02, 2009
Contact name Suzy C.P. Renn
Phone 503 517 7967
Organization name Reed College
Department Biology
Street address 3203 SE Woodstock Blvd
City Portland
State/province OR
ZIP/Postal code 97202
Country USA
Samples (164) GSM424617, GSM480806, GSM480807, GSM480808, GSM480809, GSM480810 
Series (7)
GSE16939 Paralog Specificity in cDNA Microarray Experiments
GSE19368 Malawi Duplication 20091207
GSE23094 Julidochromis species male vs. female 20100721

Data table header descriptions
ID in house clone ID traceable to 384 well plate
Array_Location Block_Column_Row_ for print 4.03 - 4.10
GB_ACC GenBank accession when quality sequence is available
TC-2006 T.I.G.R. assigned tentative contig number build-2006
spot_type indicates if spot is from a library (includes candidate clone) or is a control feature NO EMPTY FEATURES OFR

Data table
ID Array_Location GB_ACC TC-2006 spot_type GLP928_spot SPOT_ID
hh_Ab_Pinky2003_000010102 1_1_1_print4_2006 DY626896 TC1086 library
hh_Ab_Pinky2003_000010108 1_1_2_print4_2006 DY626902 TC552 library
hh_Ab_Pinky2003_000010126 1_1_3_print4_2006 DY626918 library
hh_Ab_Pinky2003_000010132 1_1_4_print4_2006 DY626924 library
hh_Ab_Pinky2003_000010150 1_1_5_print4_2006 DY626941 library
hh_Ab_Pinky2003_000010156 1_1_6_print4_2006 DY626947 TC450 library
hh_Ab_Pinky2003_000010174 1_1_7_print4_2006 DY626963 library
hh_Ab_Pinky2003_000010180 1_1_8_print4_2006 DY626969 library
hh_Ab_Pinky2003_000010486 1_1_9_print4_2006 DY631338 library
hh_Ab_Pinky2003_000010492 1_1_10_print4_2006 DY631344 TC494 library
hh_Ab_Pinky2003_000010510 1_1_11_print4_2006 DY631359 library
hh_Ab_Pinky2003_000010516 1_1_12_print4_2006 DY631365 TC801 library
hh_Ab_Pinky2003_000010534 1_1_13_print4_2006 DY631378 library
hh_Ab_Pinky2003_000010540 1_1_14_print4_2006 DY631383 TC1243 library
hh_Ab_Pinky2003_000010558 1_1_15_print4_2006 DY631398 TC978 library
hh_Ab_Pinky2003_000010564 1_1_16_print4_2006 DY631404 library
hh_Ab_Pinky2003_000010870 1_1_17_print4_2006 DY631604 TC515 library
hh_Ab_Pinky2003_000010876 1_1_18_print4_2006 library --unknown clone
hh_Ab_Pinky2003_000010894 1_1_19_print4_2006 DY631625 library
hh_Ab_Pinky2003_000010900 1_1_20_print4_2006 DY631631 TC1622 library

Total number of rows: 16970

Table truncated, full table size 1246 Kbytes.

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

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