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Status
Public on Sep 30, 2008
Title
University of Minnesota nematode, fruit fly, zebrafish, mouse, rat, and human miRNA array 1K version 1
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organisms
Caenorhabditis elegans ; Drosophila melanogaster ; Danio rerio ; Homo sapiens ; Mus musculus ; Rattus norvegicus Manufacturer
Biomedical Genomics Center Microarray Facility at the University of Minnesota
Manufacture protocol
A miRNA probe set was purchased from Invitrogen, which was designed based on the Sanger miRBase Sequence Database, Release 9.0. The set contains approximately 1,140 oligonucleotides of 34 to 44 nt long as probes. They are complementary to C. elegans, Drosophila, zebrafish, mouse, rat, and human miRNAs, and also include a number of internal and negative control probes. The oligonucleotides were dissolved in 3 x SSC and quadruply printed on Corning® GAPSTM II coated slides using a BioRobotics Microgrid II spotter. Full platform provided as supplementary file.
Submission date
Jan 29, 2008
Last update date
Sep 30, 2008
Contact name
Xiaoxiao Zhang
E-mail(s)
zhang688@umn.edu Organization name
University of Minnesota
Street address
312 Church St. SE
City
Minneapolis
ZIP/Postal code
55455
Country
USA
Samples (6)
GSM260382 , GSM260383 , GSM260384 , GSM260385 , GSM260386 , GSM260387 Series (1)
GSE10305 A method of stripping custom microarrays
Data table header descriptions ID ID/gene name miRNA_ID_LIST SPOT_ID SEQUENCE
Data table ID ID/gene name miRNA_ID_LIST SPOT_ID SEQUENCE 1
hsa-let-7a|cel-let-7|cbr-let-7|rno-let-7a|gga-let-7a|gga-let-7j|dre-let-7a|fru-let-7a|tni-let-7a|xtr-let-7a|bta-let-7a|mdo-let-7a
hsa-let-7a,cel-let-7,cbr-let-7,rno-let-7a,gga-let-7a,gga-let-7j,dre-let-7a,fru-let-7a,tni-let-7a,xtr-let-7a,bta-let-7a,mdo-let-7a
2
hsa-let-7b|mmu-let-7b|rno-let-7b|gga-let-7b|dre-let-7b|fru-let-7b|tni-let-7b|mdo-let-7b
hsa-let-7b,mmu-let-7b,rno-let-7b,gga-let-7b,dre-let-7b,fru-let-7b,tni-let-7b,mdo-let-7b
AACCACACAACCTACTACCTCAAACCACACAACCTACTACCTCA
3
hsa-let-7c|mmu-let-7c|rno-let-7c|gga-let-7c|dre-let-7c|ssc-let-7c|xtr-let-7c
hsa-let-7c,mmu-let-7c,rno-let-7c,gga-let-7c,dre-let-7c,ssc-let-7c,xtr-let-7c
AACCATACAACCTACTACCTCAAACCATACAACCTACTACCTCA
4
hsa-let-7d|mmu-let-7d|rno-let-7d|mdo-let-7d
hsa-let-7d,mmu-let-7d,rno-let-7d,mdo-let-7d
ACTATGCAACCTACTACCTCTACTATGCAACCTACTACCTCT
5
hsa-let-7e|mmu-let-7e|rno-let-7e
hsa-let-7e,mmu-let-7e,rno-let-7e
ACTATACAACCTCCTACCTCAACTATACAACCTCCTACCTCA
6
hsa-let-7f|rno-let-7f|gga-let-7f|dre-let-7f|ssc-let-7f|bta-let-7f|mdo-let-7f
hsa-let-7f,rno-let-7f,gga-let-7f,dre-let-7f,ssc-let-7f,bta-let-7f,mdo-let-7f
AACTATACAATCTACTACCTCAAACTATACAATCTACTACCTCA
7
hsa-let-7g|mmu-let-7g|gga-let-7g|mdo-let-7g
hsa-let-7g,mmu-let-7g,gga-let-7g,mdo-let-7g
8
hsa-let-7i|mmu-let-7i|rno-let-7i|gga-let-7i|xtr-let-7i|mdo-let-7i
hsa-let-7i,mmu-let-7i,rno-let-7i,gga-let-7i,xtr-let-7i,mdo-let-7i
9
hsa-miR-1|cel-miR-1|mmu-miR-1|cbr-miR-1|gga-miR-1a|ppa-miR-1|xtr-miR-1a|mdo-miR-1
hsa-miR-1,cel-miR-1,mmu-miR-1,cbr-miR-1,gga-miR-1a,ppa-miR-1,xtr-miR-1a,mdo-miR-1
10
hsa-miR-100|mmu-miR-100|rno-miR-100|gga-miR-100|aga-miR-100|dre-miR-100|ggo-miR-100|age-miR-100|ppa-miR-100|ppy-miR-100|ptr-miR-100|mml-miR-100|sla-miR-100|lla-miR-100|fru-miR-100|tni-miR-100|xtr-miR-100
hsa-miR-100,mmu-miR-100,rno-miR-100,gga-miR-100,aga-miR-100,dre-miR-100,ggo-miR-100,age-miR-100,ppa-miR-100,ppy-miR-100,ptr-miR-100,mml-miR-100,sla-miR-100,lla-miR-100,fru-miR-100,tni-miR-100,xtr-miR-100
CACAAGTTCGGATCTACGGGTCACAAGTTCGGATCTACGGGT
11
hsa-miR-101|mmu-miR-101a|rno-miR-101a|gga-miR-101|dre-miR-101a|ggo-miR-101|sla-miR-101|age-miR-101|ppa-miR-101|ppy-miR-101|ptr-miR-101|mml-miR-101|lla-miR-101|mne-miR-101|fru-miR-101a|tni-miR-101a|xtr-miR-101a|mdo-miR-101
hsa-miR-101,mmu-miR-101a,rno-miR-101a,gga-miR-101,dre-miR-101a,ggo-miR-101,sla-miR-101,age-miR-101,ppa-miR-101,ppy-miR-101,ptr-miR-101,mml-miR-101,lla-miR-101,mne-miR-101,fru-miR-101a,tni-miR-101a,xtr-miR-101a,mdo-miR-101
CTTCAGTTATCACAGTACTGTACTTCAGTTATCACAGTACTGTA
12
hsa-miR-103|mmu-miR-103|rno-miR-103|gga-miR-103|dre-miR-103|ssc-miR-103|age-miR-103|ggo-miR-103|ppa-miR-103|ppy-miR-103|ptr-miR-103|mml-miR-103|lla-miR-103|mne-miR-103|fru-miR-103|tni-miR-103|bta-miR-103|xtr-miR-103|mdo-miR-103
hsa-miR-103,mmu-miR-103,rno-miR-103,gga-miR-103,dre-miR-103,ssc-miR-103,age-miR-103,ggo-miR-103,ppa-miR-103,ppy-miR-103,ptr-miR-103,mml-miR-103,lla-miR-103,mne-miR-103,fru-miR-103,tni-miR-103,bta-miR-103,xtr-miR-103,mdo-miR-103
TCATAGCCCTGTACAATGCTGTCATAGCCCTGTACAATGCTG
13
hsa-miR-105|ssc-miR-105-1|ppy-miR-105|ggo-miR-105|ppa-miR-105|ptr-miR-105|mml-miR-105|sla-miR-105|lla-miR-105|mne-miR-105
hsa-miR-105,ssc-miR-105-1,ppy-miR-105,ggo-miR-105,ppa-miR-105,ptr-miR-105,mml-miR-105,sla-miR-105,lla-miR-105,mne-miR-105
ACAGGAGTCTGAGCATTTGAACAGGAGTCTGAGCATTTGA
14
hsa-miR-106a|ssc-miR-106a|ggo-miR-106a|age-miR-106a|ppa-miR-106a|mml-miR-106a|ppy-miR-106a|ptr-miR-106a|sla-miR-106a|mne-miR-106a
hsa-miR-106a,ssc-miR-106a,ggo-miR-106a,age-miR-106a,ppa-miR-106a,mml-miR-106a,ppy-miR-106a,ptr-miR-106a,sla-miR-106a,mne-miR-106a
CTACCTGCACTGTAAGCACTTTCTACCTGCACTGTAAGCACTTT
15
hsa-miR-106b|mmu-miR-106b|rno-miR-106b|ggo-miR-106b|age-miR-106b|ppa-miR-106b|ppy-miR-106b|ptr-miR-106b|mml-miR-106b|sla-miR-106b|lla-miR-106b|mne-miR-106b
hsa-miR-106b,mmu-miR-106b,rno-miR-106b,ggo-miR-106b,age-miR-106b,ppa-miR-106b,ppy-miR-106b,ptr-miR-106b,mml-miR-106b,sla-miR-106b,lla-miR-106b,mne-miR-106b
16
hsa-miR-107|mmu-miR-107|rno-miR-107|gga-miR-107|dre-miR-107|ssc-miR-107|mml-miR-107|ptr-miR-107|ggo-miR-107|ppy-miR-107|lla-miR-107|mne-miR-107|ppa-miR-107|fru-miR-107|tni-miR-107|xtr-miR-107|mdo-miR-107
hsa-miR-107,mmu-miR-107,rno-miR-107,gga-miR-107,dre-miR-107,ssc-miR-107,mml-miR-107,ptr-miR-107,ggo-miR-107,ppy-miR-107,lla-miR-107,mne-miR-107,ppa-miR-107,fru-miR-107,tni-miR-107,xtr-miR-107,mdo-miR-107
TGATAGCCCTGTACAATGCTGTGATAGCCCTGTACAATGCTG
17
hsa-miR-10a|mmu-miR-10a|rno-miR-10a|ggo-miR-10a|sla-miR-10a|age-miR-10a|ppa-miR-10a|xtr-miR-10a|bta-miR-10a|mdo-miR-10a
hsa-miR-10a,mmu-miR-10a,rno-miR-10a,ggo-miR-10a,sla-miR-10a,age-miR-10a,ppa-miR-10a,xtr-miR-10a,bta-miR-10a,mdo-miR-10a
CACAAATTCGGATCTACAGGGTCACAAATTCGGATCTACAGGGT
18
hsa-miR-10b|gga-miR-10b|ggo-miR-10b|mne-miR-10b|ppa-miR-10b|xtr-miR-10b|mdo-miR-10b
hsa-miR-10b,gga-miR-10b,ggo-miR-10b,mne-miR-10b,ppa-miR-10b,xtr-miR-10b,mdo-miR-10b
ACAAATTCGGTTCTACAGGGTAACAAATTCGGTTCTACAGGGTA
19
hsa-miR-122a|mmu-miR-122a|rno-miR-122a|gga-miR-122a|ssc-miR-122a|xtr-miR-122
hsa-miR-122a,mmu-miR-122a,rno-miR-122a,gga-miR-122a,ssc-miR-122a,xtr-miR-122
20
hsa-miR-124a|rno-miR-124a|gga-miR-124a|ssc-miR-124a|ggo-miR-124a|age-miR-124a|ppa-miR-124a|ppy-miR-124a|ptr-miR-124a|mml-miR-124a|lla-miR-124a|xtr-miR-124|mdo-miR-124a
hsa-miR-124a,rno-miR-124a,gga-miR-124a,ssc-miR-124a,ggo-miR-124a,age-miR-124a,ppa-miR-124a,ppy-miR-124a,ptr-miR-124a,mml-miR-124a,lla-miR-124a,xtr-miR-124,mdo-miR-124a
TGGCATTCACCGCGTGCCTTAATGGCATTCACCGCGTGCCTTAA
713 79 Kbytes .Supplementary file Size Download File type/resource GPL6432.txt.gz
20.4 Kb
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