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Platform GPL6437 Query DataSets for GPL6437
Status Public on Dec 31, 2020
Title EmArray Cyto6000 Version 2
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol See manufacturer's web site at http://www.agilent.com/
 
Description The EmArray Cyto6000 is a custom oligonucleotide microarray that is designed to detect gains and losses across the genome by combining targeted and genome-wide array analyses. The array contains high density coverage for clinically relevant deletion/duplication syndromes and the telomere and pericentromeric regions. In addition, it also contains genome-wide coverage with an average probe spacing of ~75 kb. The array is designed to detect gains or losses at a minimum of 500 kb across the genome, or smaller for regions of known microdeletion/duplication syndromes or targeted genes. The array was built using a commercial platform (Agilent Technologies) and contains approximately 44,000 oligonucleotides (60mers) that represent coding and noncoding human sequences in the genome (content sourced from the UCSC hg17 human genome: NCBI build 35, May 2004).
 
Web link http://www.genetics.emory.edu/egl/pdf/EmArray%20Cyto6000%20Quick%20Sheet.pdf
Contributor(s) Ledbetter DH
Submission date Jan 30, 2008
Last update date Dec 31, 2020
Contact name David H Ledbetter
E-mail(s) dledbetter@genetics.emory.edu
Phone 404-727-3875
Fax 404-727-3949
URL http://www.geneticslab.emory.edu
Organization name Emory University School of Medicine
Department Department of Human Genetics
Lab Emory Genetics Laboratory
Street address 615 Michael St
City Atlanta
State/province GA
ZIP/Postal code 30322
Country USA
 

Data table header descriptions
ID Feature number
SEQUENCE Oligonucleotide sequence
GB_RANGE GenBank chromosome accession.version(start..stop)
PROBE_NAME ProbeName
SUBTYPE_NAME SubTypeName
SPOT_ID Control features

Data table
ID SEQUENCE GB_RANGE PROBE_NAME SUBTYPE_NAME SPOT_ID
1 AACAAACAAGTTAAGGGCAAGATTCTTGCCAAGAGAATTAATGTGCGTATTGAGCACATT HsCGHBrightCorner --CONTROL : HsCGHBrightCorner
2 GCTAGCGAAAGCTAGCTTTTCGATCGGAAACGATCGTTTTCCAGTGACGAAAGTCACTGG DarkCorner Structural --CONTROL : DarkCorner
3 GCTAGCGAAAGCTAGCTTTTCGATCGGAAACGATCGTTTTCCAGTGACGAAAGTCACTGG DarkCorner Structural --CONTROL : DarkCorner
4 GCTAGCGAAAGCTAGCTTTTCGATCGGAAACGATCGTTTTCCAGTGACGAAAGTCACTGG DarkCorner Structural --CONTROL : DarkCorner
5 GCTAGCGAAAGCTAGCTTTTCGATCGGAAACGATCGTTTTCCAGTGACGAAAGTCACTGG DarkCorner Structural --CONTROL : DarkCorner
6 GCTAGCGAAAGCTAGCTTTTCGATCGGAAACGATCGTTTTCCAGTGACGAAAGTCACTGG DarkCorner Structural --CONTROL : DarkCorner
7 GCTAGCGAAAGCTAGCTTTTCGATCGGAAACGATCGTTTTCCAGTGACGAAAGTCACTGG DarkCorner Structural --CONTROL : DarkCorner
8 GCTAGCGAAAGCTAGCTTTTCGATCGGAAACGATCGTTTTCCAGTGACGAAAGTCACTGG DarkCorner Structural --CONTROL : DarkCorner
9 GCTAGCGAAAGCTAGCTTTTCGATCGGAAACGATCGTTTTCCAGTGACGAAAGTCACTGG DarkCorner Structural --CONTROL : DarkCorner
10 GCTAGCGAAAGCTAGCTTTTCGATCGGAAACGATCGTTTTCCAGTGACGAAAGTCACTGG DarkCorner Structural --CONTROL : DarkCorner
11 GCTAGCGAAAGCTAGCTTTTCGATCGGAAACGATCGTTTTCCAGTGACGAAAGTCACTGG DarkCorner Structural --CONTROL : DarkCorner
12 AGCCAATATGCAATTACACTCACTTGTAATCATTCAAGCAATAATCATTTTCAAGTTCCA NC_000010.8[045468415..045468474] A_16_P02255600
13 AATGTGCTTTATCTCACGAAAAGATTTGACGTAAGACAAGATCAGGGTAGAAAGAAAAGG NC_000014.7[054036305..054036364] A_16_P20049599
14 ATGAACACTTTCATCTTTACAGTATGCCTTTCACCATATGTTACATTACTGGACCCAGTT NC_000002.9[205385344..205385403] A_16_P16007884
15 AAGTGGTTACATCTTGAGTAATGGAGAATACCAGTTGAATCCCACATTGTGTGAAATATG NC_000018.8[022524824..022524883] A_16_P03330411
16 AGGACCTTATTAATTTCCCCCATCAAAATCTTAGAACATGAATAACATGAAGCCTTTCCA NC_000002.9[226120470..226120529] A_16_P36096103
17 CCCACATAAAACTGGAGTATTTACACATCACACCTTAGAACTTGGAATATGTCAACATGC NC_000002.9[228486358..228486417] A_16_P16066688
18 TGCTCCTTATAGATAGATGACATAACCTCTACAAACCAGAATTTCACCTAAAGATGGCAC NC_000009.9[024073476..024073535] A_16_P18583223
19 CTGATATTTTCCTACTTCAGATCAGCATCTTTTCTACCACATACCCACTGAAAAAGACAC NC_000020.9[049503530..049503589] A_16_P21156295
20 ATGTGGTGTATCTCGTAATGTCAATAGTTCAACAGTAACATTCAACTGAACAAGGCCTAA NC_000004.9[090581699..090581758] A_16_P16763906

Total number of rows: 45220

Table truncated, full table size 5171 Kbytes.




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