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| Status |
Public on May 08, 2008 |
| Title |
Siomi Lab fruit fly S2 AGO2 Annotation Results v1.0 (454 sequencing). |
| Technology type |
other |
| Distribution |
virtual |
| Organism |
Drosophila melanogaster |
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| Description |
Drosophila endogenous small RNAs bind to Argonaute2 in somatic cells 2008 Annotation Results
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| Contributor(s) |
Kawamura Y, Saito K, Kin T, Ono Y, Asai K, Sunohara T, Nagami-Okada T, Siomi MC, Siomi H |
| Citation(s) |
18463636 |
| Submission date |
May 08, 2008 |
| Last update date |
May 30, 2008 |
| Contact name |
Toutai MITUYAMA |
| Organization name |
National Institute of Advanced Industrial Science and Technology (AIST)
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| Department |
Artificial Intelligence Research Team
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| Lab |
Computational Omics Research Team
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| Street address |
2-4-7 Aomi
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| City |
Koto-ku |
| State/province |
Tokyo |
| ZIP/Postal code |
135-0064 |
| Country |
Japan |
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| Samples (1) |
GSM266765 |
| Series (1) |
| GSE10277 |
Drosophila endogenous small RNAs bind to Argonaute2 in somatic cells |
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| Data table header descriptions |
| ID |
Identifier |
| INTERNAL_ID |
Internal identifier |
| GENOME_MATCHES |
number of loci where the corresponding sequence is mapped |
| MATCH_TYPE |
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| SPOT_ID |
Additional annotation (NA: not applicable) |
| Data table |
| ID |
INTERNAL_ID |
GENOME_MATCHES |
MATCH_TYPE |
SPOT_ID |
| GGTTGCTTGCATCTGTGGTT |
KAWAMURA2008000001 |
1 |
MM |
transposon |
| AGGTGAACAAGGAGAGCGCG |
KAWAMURA2008000002 |
0 |
NA |
NA |
| ATCCTCAACTGTGAGGAAACA |
KAWAMURA2008000003 |
0 |
NA |
NA |
| TCGCATATGATTGTAACTGCA |
KAWAMURA2008000004 |
31 |
PM |
transposon |
| ACTGGCACGGACTTGGGGAGT |
KAWAMURA2008000005 |
9 |
MM |
rRNA |
| GGCAGACCAGGGCGCCCGAAG |
KAWAMURA2008000006 |
6 |
PM |
transposon |
| CATTGGCAGAGGCCGCTATGA |
KAWAMURA2008000007 |
19 |
PM |
transposon |
| TAGGGACCCGCATTCTGAGCG |
KAWAMURA2008000008 |
0 |
NA |
NA |
| ATGAACACCCAGATATGTTAC |
KAWAMURA2008000009 |
16 |
PM |
transposon |
| TATTTGGACTTGAGGTTCTCC |
KAWAMURA2008000010 |
1 |
PM |
no annotation |
| GGAGCGCATCCACACCGCGGT |
KAWAMURA2008000011 |
1 |
MM |
no annotation |
| TGATGGACCGTTTTACACTTT |
KAWAMURA2008000012 |
1 |
PM |
no annotation |
| AGGAACTGCTTAGAGGTGGCA |
KAWAMURA2008000013 |
0 |
NA |
NA |
| TGGCCACGATCATCTTGAGTG |
KAWAMURA2008000014 |
6 |
PM |
transposon |
| CACACGTTAGCCATCCAAGTTGACGC |
KAWAMURA2008000015 |
0 |
NA |
NA |
| GTGGACTACCTCGAGACTTTT |
KAWAMURA2008000016 |
6 |
MM |
transposon |
| TGTTGCAAACGGTCAGTGCTG |
KAWAMURA2008000017 |
60 |
PM |
transposon |
| CTCCTGATGATGACCACAGCT |
KAWAMURA2008000018 |
10 |
PM |
transposon |
| CGAGGCAGACTTGGGGACCACA |
KAWAMURA2008000019 |
12 |
PM |
transposon |
| ATTGATGACGATTATTCCTTC |
KAWAMURA2008000020 |
10 |
PM |
transposon |
Total number of rows: 23252
Table truncated, full table size 1256 Kbytes.
| Supplementary data files not provided |
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