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Platform GPL6459 Query DataSets for GPL6459
Status Public on Feb 13, 2008
Title SAMF Desulfovibrio vulgaris Hildenborough 13K oligo array version 1
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Nitratidesulfovibrio vulgaris str. Hildenborough
Manufacturer Southern Alberta Microarray Facility
Manufacture protocol The designed 70-mer oligonucleotides were custom synthesized by Invitrogen (Carlsbad, CA) on an average scale of 25 pmol/oligonucleotide. They were dissolved in 3xSSC to a concentration of 40 pmol/ul and spotted in 0.7 nl quantities, using a ChipWriter Pro (BioRad, Hercules, CA) onto Corning UltraGAPS Amino-Silane 25X75 mm Coated Slides (Fisher Scientific).
 
 
Submission date Feb 05, 2008
Last update date Jan 06, 2011
Contact name Sean Michael Caffrey
E-mail(s) smcaffre@ucalgary.ca
Phone (403) 220-3849
Organization name University of Calgary
Department Biological Scineces
Lab BS 175
Street address 2500 University Dr NW
City Calgary
State/province Alberta
ZIP/Postal code T2N 1N4
Country Canada
 
Samples (10) GSM262549, GSM262550, GSM262551, GSM262552, GSM377144, GSM377145 
Series (6)
GSE10388 Gene expression of D. vulgaris Hildenborough grown on an iron electrode under cathodic protection conditions
GSE15073 Effect of sulfide on growth physiology and gene expression of Desulfovibrio vulgaris Hildenborough
GSE20656 Effect of glutaraldehyde (Glut) on growth physiology and gene expression of Desulfovibrio vulgaris Hildenborough

Data table header descriptions
ID
ORF DVU; locus tag
GENE SYMBOL Gene symbols
DESCRIPTION Gene description
SEQUENCE oligo sequence

Data table
ID ORF GENE SYMBOL DESCRIPTION SEQUENCE
10001 DVU0001 dnaA1 chromosomal replication initiator protein DnaA gccctgcgccaacatctcaggcagacctgctccgaacaggaactgcatcagtggttcgaccctctcgacc
10002 DVU0002 dnaN DNA polymerase III, beta subunit caaatacaagcttcccgtgaacgacccggtgtggttccagaacttcagcgacttcccggccgatggtgcc
10003 DVU0003 gyrB DNA gyrase, B subunit gagattttcgagaccaaccagttctcctacgagaccctgcgcaagcgcttcgaagaactgtcctacctca
10004 DVU0004 gyrA DNA gyrase, A subunit gcatcgagaaggagctcaggaaatcgtacctcgagtactccctgagcgtcatcataggtcgcgccatccc
10005 DVU0005 lipoprotein, putative cgaggcgcgttccgccttcgccaaccgcgaatggaacgacgccgagcggcttcttgagggctaccttcgc
10006 DVU0006 universal stress protein family aggcacctctcgtcgataccacccttgcggaagacacgaccacgaaccgccaccccaaacaggctgacgc
10007 DVU0007 asnS asparaginyl-tRNA synthetase caacgacggctcatgccttgcgaacatacaggccatcgtggatgaaggcattcccgcctatgcgaacatc
10008 DVU0009 TRAP transporter, DctM subunit ttcatgacagccgggcagcttatgagcgcggggggcatttcgcagcgcatcgtccgacttgccgacacgc
10009 DVU0010 TRAP transporter, DctQ subunit cttcgcgtggttcgttcgccatcagtccacacccgcactcggcctgtcacggctcattccggcattgccc
10010 DVU0011 TRAP transporter solute receptor DctP cgacgccttcgtaccggagatggccgcactggatttcccgttcctcttcaccgacacaaccacagcagac
10011 DVU0012 hypothetical protein tgtccgagacgacggtgaagagctaccgccgcaagttccccgactgcattcccgtggccaatcagggcaa
10012 DVU0013 sensory box histidine kinase ctgctcatggcactggccccgcctttcgtctatttcgaccgcaccatccgtgaagacatgctcgaagagg
10013 DVU0014 infA1 translation initiation factor IF-1 cgcaagttctacatccgcatcctgcccggtgacagggtcaaggtcgagctttcgccctatgacctcaagc
10014 DVU0015 lgt prolipoprotein diacylglyceryl transferase cccgcgcatagaccccgttgccatcactctcggcccgctgcaattccgctggtacggcctcatgtacctg
10015 DVU0018 methyl-accepting chemotaxis protein, putative cagaagacccgcgagagcatctatacccacgaacagtactcgcttcgcgatatggtggactcggcaagca
10016 DVU0019 ngr nigerythrin gagcacaggttcccaccgtcaagaatgcgaccaacttcaacatggtggcagacagcaagaccgccgtggg
10017 DVU0021 conserved domain protein ccttctacgccgctatgcccttcaaggatcagccgacggaaggactgcgctaccatttcgctaacgactt
10018 DVU0022 HAMP domain/GGDEF domain/EAL domain protein ttcctgccgtcgtctccatcctcatgctcatggcgtcgacacaatcgcgcatcagtgaagaagagaacat
10019 DVU0024 conserved hypothetical protein gcaaggaagtctccaaggccatcgatgctctcaagaagtccggcagggtggtatcgcccaaacggtgctt
10020 DVU0025 sensory box histidine kinase accgcccagcctccccctgccaccgacgcatccggactgggcttcgtcatcgccaccactgccggtgctg

Total number of rows: 2836

Table truncated, full table size 333 Kbytes.




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Supplementary data files not provided
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