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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Feb 09, 2008 |
| Title |
Affymetrix GeneChip Porcine Genome Array probe-level |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Sus scrofa |
| Manufacturer |
Affymetrix GeneChip Porcine Genome Array probe-level |
| Manufacture protocol |
see manufacturer's web site
|
| |
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| |
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| Submission date |
Feb 07, 2008 |
| Last update date |
Aug 28, 2008 |
| Contact name |
Nicholas Eldon Hardison |
| E-mail(s) |
nhardis@unity.ncsu.edu
|
| Organization name |
North Carolina State University
|
| Street address |
4700 Hillsborough St., Room 318A
|
| City |
Raleigh |
| State/province |
NC |
| ZIP/Postal code |
27606 |
| Country |
USA |
| |
|
| Samples (66)
|
GSM264129, GSM264130, GSM264131, GSM264132, GSM264133, GSM264134
GSM264135, GSM264136, GSM264137, GSM264138, GSM264139, GSM264140, GSM264141, GSM264142, GSM264143, GSM264144, GSM264145, GSM264147, GSM264148, GSM264149, GSM264150, GSM264151, GSM264152, GSM264153, GSM264154, GSM264155, GSM264156, GSM264157, GSM264158, GSM264159, GSM264275, GSM264276, GSM264277, GSM264278, GSM264279, GSM264280, GSM264281, GSM264282, GSM264283, GSM264284, GSM264285, GSM264287, GSM264288, GSM264289, GSM264290, GSM264291, GSM264292, GSM264293, GSM264294, GSM264295, GSM264296, GSM264297, GSM264298, GSM264299, GSM264407, GSM264408, GSM264409, GSM264410, GSM264411, GSM264412, GSM264413, GSM264414, GSM264415, GSM264416, GSM264417, GSM264418
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| Series (4)
|
| GSE10441 |
Comparative Placental Efficiency in Swine Examined Using Expression Profiling |
| GSE10443 |
Tissue-Specific Transcriptional Profiling of Epigenetic Asymmetry in Porcine Parthenogenetic Fetuses1 |
| GSE10446 |
A linear-mixed model approach to identify expressed SFPs using short oligo microarrays - Placenta vs. Fibroblast |
| GSE10447 |
A linear-mixed model approach to identify expressed single nucleotide polymorphisms using short oligo microarrays |
|
| Data table header descriptions |
| ID |
|
| probe_set_id |
The probeset identifier. |
| Probe |
The individual probe number. |
| SEQUENCE |
Oligonucleotide sequence for the individual probe |
| sequence_type |
Type of the probeset target sequence. |
| GB_ACC |
Accession for probeset target. |
| rep_definition |
Description of probeset target. |
| gene_name |
Name of probeset target (gene). |
| product |
Product of the target. |
| SPOT_ID |
|
| Data table |
| ID |
probe_set_id |
Probe |
SEQUENCE |
sequence_type |
GB_ACC |
rep_definition |
gene_name |
product |
SPOT_ID |
| Ssc.1.1.S1_at_0 |
Ssc.1.1.S1_at |
0 |
GAGGGATGCCTCTGGGCAGAAACCT |
FLmRNA |
NM_213988.1 |
Sus scrofa steroid 5-alpha-reductase 2 (ST5AR2), mRNA. |
ST5AR2 |
steroid 5-alpha-reductase 2 |
|
| Ssc.1.1.S1_at_1 |
Ssc.1.1.S1_at |
1 |
GAAACCTGTTTTCTTTGACTCGACA |
FLmRNA |
NM_213988.1 |
Sus scrofa steroid 5-alpha-reductase 2 (ST5AR2), mRNA. |
ST5AR2 |
steroid 5-alpha-reductase 2 |
|
| Ssc.1.1.S1_at_10 |
Ssc.1.1.S1_at |
10 |
AAATGCCTCTCATATCATGGATGTT |
FLmRNA |
NM_213988.1 |
Sus scrofa steroid 5-alpha-reductase 2 (ST5AR2), mRNA. |
ST5AR2 |
steroid 5-alpha-reductase 2 |
|
| Ssc.1.1.S1_at_2 |
Ssc.1.1.S1_at |
2 |
GACTCGACAGTGTTTCACACATAGT |
FLmRNA |
NM_213988.1 |
Sus scrofa steroid 5-alpha-reductase 2 (ST5AR2), mRNA. |
ST5AR2 |
steroid 5-alpha-reductase 2 |
|
| Ssc.1.1.S1_at_3 |
Ssc.1.1.S1_at |
3 |
GATCTGGGCCTGTAGAACCTGCTAA |
FLmRNA |
NM_213988.1 |
Sus scrofa steroid 5-alpha-reductase 2 (ST5AR2), mRNA. |
ST5AR2 |
steroid 5-alpha-reductase 2 |
|
| Ssc.1.1.S1_at_4 |
Ssc.1.1.S1_at |
4 |
GAACCTGCTAAGAACTGGGACTGAT |
FLmRNA |
NM_213988.1 |
Sus scrofa steroid 5-alpha-reductase 2 (ST5AR2), mRNA. |
ST5AR2 |
steroid 5-alpha-reductase 2 |
|
| Ssc.1.1.S1_at_5 |
Ssc.1.1.S1_at |
5 |
GGGACTGATCAGCTGATACACACGA |
FLmRNA |
NM_213988.1 |
Sus scrofa steroid 5-alpha-reductase 2 (ST5AR2), mRNA. |
ST5AR2 |
steroid 5-alpha-reductase 2 |
|
| Ssc.1.1.S1_at_6 |
Ssc.1.1.S1_at |
6 |
GATACACACGAGCATTTGCAACTTT |
FLmRNA |
NM_213988.1 |
Sus scrofa steroid 5-alpha-reductase 2 (ST5AR2), mRNA. |
ST5AR2 |
steroid 5-alpha-reductase 2 |
|
| Ssc.1.1.S1_at_7 |
Ssc.1.1.S1_at |
7 |
AGTGCTGAGACTTTGGACTCTCTAA |
FLmRNA |
NM_213988.1 |
Sus scrofa steroid 5-alpha-reductase 2 (ST5AR2), mRNA. |
ST5AR2 |
steroid 5-alpha-reductase 2 |
|
| Ssc.1.1.S1_at_8 |
Ssc.1.1.S1_at |
8 |
AGTATTTGTCTCTGTAGGCCCAGGT |
FLmRNA |
NM_213988.1 |
Sus scrofa steroid 5-alpha-reductase 2 (ST5AR2), mRNA. |
ST5AR2 |
steroid 5-alpha-reductase 2 |
|
| Ssc.1.1.S1_at_9 |
Ssc.1.1.S1_at |
9 |
TATCAGCTGCAGTGCTAAGTCCAGG |
FLmRNA |
NM_213988.1 |
Sus scrofa steroid 5-alpha-reductase 2 (ST5AR2), mRNA. |
ST5AR2 |
steroid 5-alpha-reductase 2 |
|
| Ssc.100.1.S1_at_0 |
Ssc.100.1.S1_at |
0 |
GATTCCTGGATGCAACCTGGGACAT |
FLmRNA |
NM_214022.1 |
Sus scrofa tumor-necrosis factor (TNF), mRNA. |
TNF |
tumor-necrosis factor |
|
| Ssc.100.1.S1_at_1 |
Ssc.100.1.S1_at |
1 |
GCTGCCAGGGAAGCTTGGGTTCCAA |
FLmRNA |
NM_214022.1 |
Sus scrofa tumor-necrosis factor (TNF), mRNA. |
TNF |
tumor-necrosis factor |
|
| Ssc.100.1.S1_at_10 |
Ssc.100.1.S1_at |
10 |
GGGAGTTGTGTCTGTAACCGCCCTA |
FLmRNA |
NM_214022.1 |
Sus scrofa tumor-necrosis factor (TNF), mRNA. |
TNF |
tumor-necrosis factor |
|
| Ssc.100.1.S1_at_2 |
Ssc.100.1.S1_at |
2 |
CTTGATGACTTTTTAGGCTTCCCTT |
FLmRNA |
NM_214022.1 |
Sus scrofa tumor-necrosis factor (TNF), mRNA. |
TNF |
tumor-necrosis factor |
|
| Ssc.100.1.S1_at_3 |
Ssc.100.1.S1_at |
3 |
AATTTTCCAGACTTCCCTGGGATGG |
FLmRNA |
NM_214022.1 |
Sus scrofa tumor-necrosis factor (TNF), mRNA. |
TNF |
tumor-necrosis factor |
|
| Ssc.100.1.S1_at_4 |
Ssc.100.1.S1_at |
4 |
GCCAGCTCCCTCTTATTTATATTTG |
FLmRNA |
NM_214022.1 |
Sus scrofa tumor-necrosis factor (TNF), mRNA. |
TNF |
tumor-necrosis factor |
|
| Ssc.100.1.S1_at_5 |
Ssc.100.1.S1_at |
5 |
GAGACCCAGCATAAGGGCTGCCTTG |
FLmRNA |
NM_214022.1 |
Sus scrofa tumor-necrosis factor (TNF), mRNA. |
TNF |
tumor-necrosis factor |
|
| Ssc.100.1.S1_at_6 |
Ssc.100.1.S1_at |
6 |
GGCTGCCTTGGTTCAGATGTGTTTT |
FLmRNA |
NM_214022.1 |
Sus scrofa tumor-necrosis factor (TNF), mRNA. |
TNF |
tumor-necrosis factor |
|
| Ssc.100.1.S1_at_7 |
Ssc.100.1.S1_at |
7 |
AGCTGAACTGTAGGTTGCTCCCACC |
FLmRNA |
NM_214022.1 |
Sus scrofa tumor-necrosis factor (TNF), mRNA. |
TNF |
tumor-necrosis factor |
|
Total number of rows: 265635
Table truncated, full table size 37094 Kbytes.
| Supplementary data files not provided |
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