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| Status |
Public on Mar 15, 2008 |
| Title |
Agilent-016989 Synechocystis sp. PCC 6803 8x15K custom array |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Synechocystis sp. PCC 6803 |
| Manufacturer |
Agilent Technologies |
| Manufacture protocol |
Agilent’s SurePrint technology
8x15K custom design
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| |
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| Contributor(s) |
Hess W, Wilde A |
| Submission date |
Mar 04, 2008 |
| Last update date |
Jul 14, 2014 |
| Contact name |
Hans-Joachim Mollenkopf |
| E-mail(s) |
mollenkopf@mpiib-berlin.mpg.de
|
| Phone |
+49 30 28460 482
|
| Organization name |
Max-Planck-Institute for Infection Biology
|
| Lab |
Microarray/Genomics Core Facility
|
| Street address |
Charitéplatz 1
|
| City |
Berlin |
| ZIP/Postal code |
10117 |
| Country |
Germany |
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| Samples (34)
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GSM270625, GSM270632, GSM270633, GSM270634, GSM270635, GSM270643
GSM270658, GSM270721, GSM786211, GSM786212, GSM786213, GSM786214, GSM786215, GSM786216, GSM786217, GSM786218, GSM786219, GSM786220, GSM786221, GSM786222, GSM786223, GSM786224, GSM786225, GSM786226, GSM786227, GSM786228, GSM786229, GSM786230, GSM786231, GSM786232, GSM786233, GSM786234, GSM786235, GSM786236
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| Series (2) |
| GSE10708 |
The orthologue of the RNA chaperone Hfq is essential for cell motility of the cyanobacterium Synechocystis PCC 6803 |
| GSE31672 |
Comparison of carboxysomal (ccmM) and photorespiratory (glcD1/D2) mutants of Synechocystis sp. PCC 6803 using metabolic and transcriptomic phenotyping |
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| Data table header descriptions |
| ID |
|
| Row |
Feature location: row |
| Col |
Feature location: column |
| SEQUENCE |
Probe sequence (sequence of bases printed on the array) |
| ProbeUID |
Unique integer for each unique probe in a design |
| ControlType |
Feature control type (0=control type none, 1=positive control, -1=negative control, -20000=not probe, -30000=ignore) |
| ProbeName |
Agilent-assigned identifier for the probe synthesized on the microarray |
| ORF |
Identifier for the gene for which the probe provides expression information |
| SystematicName |
Identifier for the target sequence that the probe was designed to hybridize with |
| SPOT_ID |
spot identifier |
| Data table |
| ID |
Row |
Col |
SEQUENCE |
ProbeUID |
ControlType |
ProbeName |
ORF |
SystematicName |
SPOT_ID |
| 1 |
1 |
1 |
|
0 |
1 |
GE_BrightCorner |
|
GE_BrightCorner |
--CONTROL: GE_BrightCorner |
| 2 |
1 |
2 |
|
1 |
1 |
DarkCorner |
|
DarkCorner |
--CONTROL: DarkCorner |
| 3 |
1 |
3 |
|
1 |
1 |
DarkCorner |
|
DarkCorner |
--CONTROL: DarkCorner |
| 4 |
1 |
4 |
GCCTGCCTACCGGATCACCGATTCGGGTTTGATCAATGCTTATCCTGTTTCTCCTCCTGT |
3 |
0 |
sll1862_252 |
sll1862 |
sll1862 |
|
| 5 |
1 |
5 |
GGGAATCTTCCCCCCAAATCTGTCCTGTGCCTATCGACCAACAGCCGGTCAACGAATATG |
5 |
0 |
sll0584_14 |
sll0584 |
sll0584 |
|
| 6 |
1 |
6 |
TTAGATGTGGCAGAGAGGGCTGGCGTATTTATTCCCACGGGCTGTTTAATGGGTTCCTGC |
7 |
0 |
ssr1041_67 |
ssr1041 |
ssr1041 |
|
| 7 |
1 |
7 |
TGGATTGCCCTTTCCAGTATTGCTCCCATCGGGTTGTTGATGTCTGGTTATGCTTCCAAT |
9 |
0 |
sll0519_403 |
sll0519 |
sll0519 |
|
| 8 |
1 |
8 |
GGCATCACGGGGCAAGATGGCTCCTATCTGAGTGAATTGTTGTTGGAAAAGGGCTACCAA |
11 |
0 |
sll1212_31 |
sll1212 |
sll1212 |
|
| 9 |
1 |
9 |
GGGTGATCCAATACATCCAACTCAGTGCCCCCACGCCGGAACCGAAACTATACGGTTTTT |
13 |
0 |
slr0926_755 |
slr0926 |
slr0926 |
|
| 10 |
1 |
10 |
TGCTTGGGCATTCACAGAGTTGCGTTGCAGTTTTGAAAATCGGTCTATTGTTCCTGATTT |
15 |
0 |
sll1250_207 |
sll1250 |
sll1250 |
|
| 11 |
1 |
11 |
TCGCTCCCACCTCAACCAGGACTTGCGCGATCGGTACGGCACTTAATTTTTTTTTTTTTT |
17 |
0 |
sll0395_594 |
sll0395 |
sll0395 |
|
| 12 |
1 |
12 |
TGGCCCAATCTCAAAGTATTACCTGCTTGAGGGAGGGCAGTTTTATTACCTGTCCTGGCT |
19 |
0 |
slr0522_68 |
slr0522 |
slr0522 |
|
| 13 |
1 |
13 |
ACTAAAGCCGCCATTGATATATCTTCCGGCGATCGGGAGGCTAGGGCTTTTTTTTTTTTT |
21 |
0 |
sll1871_1021 |
sll1871 |
sll1871 |
|
| 14 |
1 |
14 |
CCCAGCGGATACGGTGGATCAACCCCTGCGGGCGTTAATTTTTGACAGTTATTACGATGC |
23 |
0 |
slr0604_561 |
slr0604 |
slr0604 |
|
| 15 |
1 |
15 |
CACTGACCACGCCACCCTGGAGAAACTTCAAGGAGACCACCCCATTATTGATGCGATTCT |
25 |
0 |
slr0707_1956 |
slr0707 |
slr0707 |
|
| 16 |
1 |
16 |
TTGCAGTCCTGGTATGAGTATTTGGATCAATGGCAACTCCAACACTATTCGCCGTTGGTT |
27 |
0 |
sll1432_781 |
sll1432 |
sll1432 |
|
| 17 |
1 |
17 |
TGTCTTTGACCCGCAAGGAATACAGCATTCTGGAATTACTACTCCGCAATGGCCGTCGGT |
29 |
0 |
slr1584_443 |
slr1584 |
slr1584 |
|
| 18 |
1 |
18 |
GCCAGTCTGTTCACAATCAATGCCTACCTAACTTCAGCCCAAGCGGAAAGGGTAGAAGCG |
31 |
0 |
sll2008_949 |
sll2008 |
sll2008 |
|
| 19 |
1 |
19 |
GGGGGATTGCCGCAAGGAAGACCTGATTAAAGAACAGCTAAAAACCGCCGATGTCTTTTT |
33 |
0 |
sll0576_165 |
sll0576 |
sll0576 |
|
| 20 |
1 |
20 |
GGTGGGGTCTGCCTGTGTAACGGCCTATCGGGTGGGAGGGCGTAAAGTTTTTTTTTTTTT |
35 |
0 |
sll0504_978 |
sll0504 |
sll0504 |
|
Total number of rows: 15744
Table truncated, full table size 1638 Kbytes.
| Supplementary data files not provided |
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