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Platform GPL6600 Query DataSets for GPL6600
Status Public on Jul 03, 2008
Title Zebrafish 12kb promoter 244K array_slide 1 of 2
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Danio rerio
Manufacturer Agilent Technologies
Manufacture protocol As described at www.agilent.com
 
 
Submission date Mar 18, 2008
Last update date Jul 03, 2008
Contact name Fiona Wardle
E-mail(s) fcw27@cam.ac.uk
Organization name University of Cambridge
Department Physiology, Development and Neuroscience
Street address Downing Street
City Cambridge
ZIP/Postal code CB2 3DY
Country United Kingdom
 
Samples (19) GSM275869, GSM654994, GSM654995, GSM654996, GSM654997, GSM654998 
Series (2)
GSE10883 A network of transcriptional repression specifies muscle fibre type in the zebrafish embryo
GSE26609 Genes for embryo development are packaged in blocks of multivalent chromatin in zebrafish sperm

Data table header descriptions
ID
SEQUENCE
ControlType
ProbeName Probe ID
GeneName Nearest gene or control type
Name Chromosomal position of probe on Zv6 assembly
chromosome
RANGE_GB
RANGE_START
RANGE_END
SPOT_ID

Data table
ID SEQUENCE ControlType ProbeName GeneName Name chromosome RANGE_GB RANGE_START RANGE_END SPOT_ID
1 1 DarkCorner DarkCorner DarkCorner CONTROL
2 1 DarkCorner DarkCorner DarkCorner CONTROL
3 1 DarkCorner DarkCorner DarkCorner CONTROL
4 TAGGACAAATATTATTTAAAGCATACATTTTGGACGGTACATGCATCAAATTAAACCTGT WH_10_P0248462 ENSDART00000032805.41 chr4:14168818-14168877 chr4 NC_007115.2 14168818 14168877
5 AAGATTTACTGCCTGATGAAGCCTGTTATAATGCAGTTATGATGACCCTATAAATCTAGA WH_10_P0040160 ENSDART00000069026.41 chr11:7600660-7600719 chr11 NC_007122.2 7600660 7600719
9 CTGCTTTACCTGTAAATGTTGTAAAAGTATTGCTCTTTGTTTGTTGATGTTAACTAAAGT WH_10_P0338182 chr11:12241438-12241497 chr11:12241438-12241497 chr11 NC_007122.2 12241438 12241497
11 GTTTTGGACTGACGCACTCCCTCACACAACAGAAAGAGACCTACACCACCACTGGCTATA WH_10_P0066414 zgc:101846 chr10:27604362-27604421 chr10 NC_007121.2 27604362 27604421
12 AAACGGTCTAAAATGGTTGAAAATATTCCCACCTGACTGGTAAAACTGGAAAGACTCATG WH_10_P0165982 chr5:42276417-42276476 chr5:42276417-42276476 chr5 NC_007116.2 42276417 42276476
13 TTTAGATCAAATATTGTAGCATTGGTAAGGAGACGTATTAAGAGGTTTTACTGCAAATCA WH_10_P0140885 chr7:79310486-79310545 chr7:79310486-79310545 chr7 NC_007118.2 79310486 79310545
15 CGAGTTGTGTTGTAAATGTAAGCTCCTTAGCAGCAACAGTAGAGGAAACAACAACGATCA WH_10_P0367501 chr5:70207257-70207316 chr5:70207257-70207316 chr5 NC_007116.2 70207257 70207316
16 AAAAGAAATGCTGCACATATTTTTGTTGCACATGTTTTGCACAATTGAAATGTTGCACAA WH_10_P0094963 pin1 chr1:66829674-66829733 chr1 NC_007112.2 66829674 66829733
17 TTGTACCCACAAACTATCTCTATAAGAATGCTTGGGGGGATGTTTTAGATTTCATTATCT WH_10_P0256280 ENSDART00000032958 chr4:23423459-23423518 chr4 NC_007115.2 23423459 23423518
18 TCTGCCACAAACACATTTCTCAGGATTCTGGCCAACTCTGGCAGCCGTGACATCATCAAC WH_10_P0151009 chr7:76353359-76353418 chr7:76353359-76353418 chr7 NC_007118.2 76353359 76353418
19 CTTAAAATGTCAGCGTTAAATTACTTTACTGACTACACTATTATCATGTAATCTGTGCTC WH_10_P0217054 si:busm1-79f24.1 chr1:58017846-58017905 chr1 NC_007112.2 58017846 58017905
21 TGTCCACATATGGCAAGTGGAGGAGTGTTCATCATTGCTGCATAAAGCCTATAGTGTCTG WH_10_P0110002 mxc chr9:30209120-30209179 chr9 NC_007120.2 30209120 30209179
22 GGCCTGTGGGGAGAAGTCATGGAATTTTAATAGCAAAAATTTGTATGAGCCCTGTATGTT WH_10_P0137640 h3f3a chr3:53752988-53753047 chr3 NC_007114.2 53752988 53753047
24 AATGAATGGTTTTCATAGTGTAGCACTTACAGTATATGGTGTGAAAGCCACTTCACGCTG WH_10_P0139903 mta2 chr7:16111563-16111622 chr7 NC_007118.2 16111563 16111622
25 AACTGTTTACTGCAGGTAATATGACTCAGTACCAGTGGATCATTCCGGAGAAATCCGGTC WH_10_P0322561 chr10:22264764-22264823 chr10:22264764-22264823 chr10 NC_007121.2 22264764 22264823
27 AGTATGTCACGATTCAAATCGGTTGAGATGCCAAACGAATCACGATACAGTTCGAGTAGG WH_10_P0102677 MY76 chr8:45718377-45718436 chr8 NC_007119.2 45718377 45718436
29 TGGTAATCCTTGAATAGTTCTTACATTAGGTACAGTACATTTAGCATATTTAATATCAGG WH_10_P0191745 chr7:63627656-63627715 chr7:63627656-63627715 chr7 NC_007118.2 63627656 63627715

Total number of rows: 175746

Table truncated, full table size 26787 Kbytes.




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