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Platform GPL6660 Query DataSets for GPL6660
Status Public on Apr 24, 2008
Title Nsp copy number (CN) array (ds2)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
 
Description Research Array
The Nsp copy number (CN) array contains 12,339,139 oligonucleotide probes tiled onto two arrays (ds1 and ds2 arrays). Probes were selected to represent each of the 1,330,354 fragments between 200-1100bp predicted to arise after digestion of human genomic DNA with the restriction enzyme NspI.
Platform data table annotation based on genome build 35: hg17 (May 2004 build).
 
Submission date Mar 27, 2008
Last update date Apr 24, 2008
Contact name Fan Shen
E-mail(s) Fan_Shen@affymetrix.com
Phone 408-731-5762
Organization name Affymetrix, Inc
Street address 3420 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (21) GSM282334, GSM282335, GSM282336, GSM282337, GSM282338, GSM282339 
Series (1)
GSE9053 Improved detection of global copy number variation using high density, non-polymorphic oligonucleotide probes

Data table header descriptions
ID
probesetId
SEQUENCE
chr
RANGE_GB ACCESSION.VERSION
SPOT_ID no ACCESSION.VERSION
strand
frag_start The starting position of the Nsp restriction fragment on which the probe lies
frag_end The ending position of the Nsp restriction fragment on which the probe lies
spotId

Data table
ID probesetId SEQUENCE chr RANGE_GB SPOT_ID strand frag_start frag_end spotId
2354176 1 CGTCTTCACTACCTTCGACTTCGTG 4 NC_000004.9 + 179644352 179645326 main
5590776 1 TTGATCTCGCCAAGTGGGTCACGAT 4 NC_000004.9 + 179644352 179645326 main
1797407 1 GTTCATCTAAAGTCTGTAGGACCGA 4 NC_000004.9 + 179644352 179645326 main
4795342 1 ATAAAGTCCCGTCCTTAGTACTGAA 4 NC_000004.9 + 179644352 179645326 main
1901279 1 GTTTCTGTTAAGTTCTGATGTCCGG 4 NC_000004.9 + 179644352 179645326 main
2675104 1 GGGTCACGATTACTGTGTCATGCTT 4 NC_000004.9 + 179644352 179645326 main
5908669 1 ACTCACGGGGTTTCAAAGGTAATGA 4 NC_000004.9 + 179644352 179645326 main
3651040 1 ACTATAATGGGGTGGGTTCATCTAA 4 NC_000004.9 + 179644352 179645326 main
2073315 2 ATTCTGCGTCGCATCTCTGGATCAT 5 NC_000005.8 + 156929720 156930631 main
5946333 2 ACAAGAACGTCTCTCCTGGACTCGT 5 NC_000005.8 + 156929720 156930631 main
2348368 2 ATTACGACTGTGTTCGATTCACGTC 5 NC_000005.8 + 156929720 156930631 main
5846099 2 ATAGAATTTTAGGTCATCCGAGGGG 5 NC_000005.8 + 156929720 156930631 main
626848 2 ATGTGACCGTCCTCAACTGTTGACT 5 NC_000005.8 + 156929720 156930631 main
6327237 2 CTGTTGACTCCAAACCCGATGGATG 5 NC_000005.8 + 156929720 156930631 main
1607281 2 CTTCTGAAGTCTTTCGGGGCACTCT 5 NC_000005.8 + 156929720 156930631 main
16179 2 CTAAGAGTACGGAATCGAAGGCCTC 5 NC_000005.8 + 156929720 156930631 main
3732112 3 GATATTCTAGGCTTCCTACAATACT X NC_000023.8 + 33796599 33797311 main
4451537 3 TGTGATATTCTAGGCTTCCTACAAT X NC_000023.8 + 33796599 33797311 main
5837483 3 TGATATTCTAGGCTTCCTACAATAC X NC_000023.8 + 33796599 33797311 main
3689254 3 AATTCTATCGATACTGAATTCACCA X NC_000023.8 + 33796599 33797311 main

Total number of rows: 6276448

Table truncated, full table size 499219 Kbytes.




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Supplementary data files not provided
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