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| Status |
Public on Apr 08, 2008 |
| Title |
IPMC - Coxiella burnetti 2k |
| Technology type |
spotted oligonucleotide |
| Distribution |
non-commercial |
| Organism |
Coxiella burnetii |
| Manufacturer |
IPMC |
| Manufacture protocol |
Spotted microarray
|
| Support |
glass |
| Coating |
aminosilane |
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| Description |
Pangenomic array concerning Coxiella burnetii specie,
based on sequence accession number : NC_002971.
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| Web link |
http://www.microarray.fr
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| Contributor(s) |
Le Brigand K, Barbry P |
| Submission date |
Apr 02, 2008 |
| Last update date |
Apr 08, 2008 |
| Contact name |
Kevin Lebrigand |
| Organization name |
IPMC/CNRS
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| Lab |
Functional Genomics Platform of Nice-Sophia-Antipolis, France.
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| Street address |
660 route des lucioles
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| City |
Valbonne - Sophia-Antipolis |
| ZIP/Postal code |
06560 |
| Country |
France |
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| Samples (64)
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GSM542602, GSM542603, GSM542604, GSM542605, GSM542606, GSM542607
GSM542608, GSM542609, GSM542610, GSM542611, GSM542612, GSM542613, GSM782882, GSM782883, GSM782884, GSM782885, GSM782886, GSM782887, GSM782888, GSM782889, GSM782890, GSM782891, GSM782892, GSM782893, GSM782894, GSM782895, GSM782896, GSM782897, GSM782898, GSM782899, GSM782900, GSM782901, GSM782902, GSM782903, GSM782904, GSM782905, GSM782906, GSM782907, GSM782908, GSM782909, GSM782910, GSM782911, GSM782912, GSM782913, GSM782914, GSM782915, GSM782916, GSM782917, GSM782918, GSM782919, GSM782920, GSM782921, GSM782922, GSM782923, GSM782924, GSM782925, GSM782926, GSM782927, GSM782928, GSM782929, GSM782930, GSM782931, GSM782932, GSM782933
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| Series (2) |
| GSE21778 |
Early response of Coxiella burnetii to temperature stress |
| GSE31543 |
Genotyping of Coxiella burnetii strains collection |
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| Data table header descriptions |
| ID |
|
| BLOCK |
Block |
| COLUMN |
Column in block |
| ROW |
Row in block |
| SPOT ID |
alternative identifier |
| ORF |
Accession of spotted oligonucleotide |
| GENE |
Gene symbol (if provided in genbank file) |
| SEQUENCE |
Sequence of spotted oligonucleotide |
| Data table |
| ID |
BLOCK |
COLUMN |
ROW |
SPOT ID |
ORF |
GENE |
SEQUENCE |
| 1 |
1 |
1 |
1 |
adhoc-32079 |
CBU_0273 |
nogene |
CCTATGGATTAAAAGAGAATAAAATTAAAAGAGCGGCATTCTTGTTGGGC |
| 2 |
1 |
2 |
1 |
adhoc-32079 |
CBU_0273 |
nogene |
CCTATGGATTAAAAGAGAATAAAATTAAAAGAGCGGCATTCTTGTTGGGC |
| 3 |
1 |
3 |
1 |
adhoc-32076 |
CBU_0270 |
nogene |
GTTTAAACGGTATCGATTATGAGAGAGGCGTTGAAATTGAGAAGGCTATT |
| 4 |
1 |
4 |
1 |
adhoc-32076 |
CBU_0270 |
nogene |
GTTTAAACGGTATCGATTATGAGAGAGGCGTTGAAATTGAGAAGGCTATT |
| 5 |
1 |
5 |
1 |
adhoc-32073 |
CBU_0267 |
nogene |
CTCATTCCATTAATAAATCAAAGGGTATTTTCAACTTTGGAGAAGGCCTTT |
| 6 |
1 |
6 |
1 |
adhoc-32073 |
CBU_0267 |
nogene |
CTCATTCCATTAATAAATCAAAGGGTATTTTCAACTTTGGAGAAGGCCTTT |
| 7 |
1 |
7 |
1 |
adhoc-32070 |
CBU_0263 |
rpoA |
GGCGACTTAGTACAATGCACTGAAAACGATTTACTCAAGACCCCTAATTTGG |
| 8 |
1 |
8 |
1 |
adhoc-32070 |
CBU_0263 |
rpoA |
GGCGACTTAGTACAATGCACTGAAAACGATTTACTCAAGACCCCTAATTTGG |
| 9 |
1 |
9 |
1 |
adhoc-32055 |
CBU_0248 |
rplN |
GGTCCGTGAGTTACGTACCGATAAATTTATGAAAATTATTTCATTGGCCTTA |
| 10 |
1 |
10 |
1 |
adhoc-32055 |
CBU_0248 |
rplN |
GGTCCGTGAGTTACGTACCGATAAATTTATGAAAATTATTTCATTGGCCTTA |
| 11 |
1 |
11 |
1 |
adhoc-32052 |
CBU_0244 |
rpsC |
ATTAGTCGCTGAAAACATAGCTCAACAATTAGAACGTCGGGTCATGTTCC |
| 12 |
1 |
12 |
1 |
adhoc-32052 |
CBU_0244 |
rpsC |
ATTAGTCGCTGAAAACATAGCTCAACAATTAGAACGTCGGGTCATGTTCC |
| 13 |
1 |
13 |
1 |
adhoc-32049 |
CBU_0241 |
rplB |
TTATAAAACGCGTCGCAATAAACGCACGAGCAACATGATCATTCGTGATC |
| 14 |
1 |
14 |
1 |
adhoc-32049 |
CBU_0241 |
rplB |
TTATAAAACGCGTCGCAATAAACGCACGAGCAACATGATCATTCGTGATC |
| 15 |
1 |
15 |
1 |
adhoc-32046 |
CBU_0238 |
rplC |
CAAAAGCTGGCGATGAATTAAAGGTAGATATCTTTAAAGAAGGCCAAGTGG |
| 16 |
1 |
16 |
1 |
adhoc-32046 |
CBU_0238 |
rplC |
CAAAAGCTGGCGATGAATTAAAGGTAGATATCTTTAAAGAAGGCCAAGTGG |
| 17 |
1 |
1 |
2 |
adhoc-32127 |
CBU_0327 |
nogene |
TAGATCGTTTGTTATTCGATGACTCTGGCACTTTATCATTCGCTGGAGAG |
| 18 |
1 |
2 |
2 |
adhoc-32127 |
CBU_0327 |
nogene |
TAGATCGTTTGTTATTCGATGACTCTGGCACTTTATCATTCGCTGGAGAG |
| 19 |
1 |
3 |
2 |
adhoc-32124 |
CBU_0323 |
nogene |
AATTTGATGGAAAACGATATTATTCATTTAGAAACCGTCGCTGAACTGGT |
| 20 |
1 |
4 |
2 |
adhoc-32124 |
CBU_0323 |
nogene |
AATTTGATGGAAAACGATATTATTCATTTAGAAACCGTCGCTGAACTGGT |
Total number of rows: 9216
Table truncated, full table size 745 Kbytes.
| Supplementary data files not provided |
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