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Platform GPL6733 Query DataSets for GPL6733
Status Public on Dec 31, 2008
Title China Agricultural University Zea Mays 32K Version A
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Zea mays
Manufacturer Arizona University,Maize Oligonucleotide Array Project
Manufacture protocol http://www.maizearray.org
Spotted oligo array on glass. The whole maize array set similar to 1.1 version contains 55550 unique probes from maize and array A contains 28833 of them. The number of total spots including empty and controls is 32448.
 
 
Contributor(s) Gardiner J
Submission date Apr 11, 2008
Last update date Dec 31, 2008
Contact name Guohua Mi
E-mail(s) miguohua@cau.edu.cn
Organization name China Agricultural University
Department Plant Nutrition
Street address Yuan-Ming-Yuan West Rd 2
City Beijing
ZIP/Postal code 100094
Country China
 
Samples (2) GSM281236, GSM281237
Series (1)
GSE11145 Gene expression induced by localized nitrate in a split-root system

Data table header descriptions
ID
Oligo_ID an identifier used by Operon to identify a particular oligo on the array (~58k oligos). Format (eg. MZ00002633
Name The accession of the longest representative sequence that matches the oligo with 100% identity over 100% of the oligo sequence. The sequence can be an Assembled Zea Mays (AZM) genomic sequence (eg. ZM4_13684), a GenBank entry (eg. BG319830), a TIGR Maize Gene Index entry (TC233604) or a Maize Repeat entry (e.g. ZRSgTERTOOT22542).
Tigr.ID an identifier used by TIGR to identify a particular oligo on the array (~58k oligos). Format (eg. TM00013146).
Putative_Annotation The putative annotation for this oligo. The annotation is generated by searching the representative longest sequence against a non-redundant amino acid database. The annotation from the top nraa hit (above certain cutoff (P_value of E-10)) was used as the putative annotation of the oligo. NA means no match was present in the nraa database above the cutoff value.
GB_ACC
SPOT_ID

Data table
ID Oligo_ID Name Tigr.ID Putative_Annotation GB_ACC SPOT_ID
1 MZ00033920 TC203208 TM00033920 contains ESTs C99731(E21182),D47967(S13788) receptor-like protein kinase {Oryza sativa (japonica cultivar-group);} TIGR:TC203208
2 MZ00033926 TC226413 TM00033926 hypothetical protein-like protein {Sorghum bicolor;} TIGR:TC226413
3 MZ00033944 TC218023 TM00033944 Unknown protein {Arabidopsis thaliana;} TIGR:TC218023
4 MZ00033950 W49886 TM00033950 W49886
5 MZ00033968 BM896011 TM00033968 BM896011
6 MZ00033974 CF243597 TM00033974 putative membrane related protein CP5 {Oryza sativa (japonica cultivar-group);} CF243597
7 MZ00033992 AZM3_1011 TM00033992 hypothetical protein dl3180w - Arabidopsis thaliana {Arabidopsis thaliana;} ^|^GB|CAB10207.1|2244784|ATFCA0 hypothetical protein {Arabidopsis thaliana;} ^|^GB|CAB78470.1|7268133|ATCHRIV38 hypothetical protein {Arabidopsis thaliana;} TIGR:AZM3_1011
8 MZ00033998 AZM4_39310 TM00033998 putative DHHC-type zinc finger domain-containing protein {Oryza sativa (japonica cultivar-group);} TIGR:AZM4_39310
9 MZ00004660 BM078955 TM00004660 disulfide isomerase-like protein {Oryza sativa (japonica cultivar-group);} BM078955
10 MZ00004666 BM079101 TM00004666 OSJNBa0029L02.2 {Oryza sativa (japonica cultivar-group);} BM079101
11 MZ00004684 BM079403 TM00004684 BM079403
12 MZ00004690 BM079508 TM00004690 BM079508
13 MZ00004708 BM079973 TM00004708 BM079973
14 MZ00004714 BM080110 TM00004714 BM080110
15 MZ00004732 BM080478 TM00004732 BM080478
16 MZ00004738 BM080542 TM00004738 hypothetical protein [imported] - Arabidopsis thaliana {Arabidopsis thaliana;} ^|^GB|AAB60752.1|2160189|F21M12 Similar to A. thaliana receptor-like protein kinase (gb|RLK5_ARATH). ESTs gb|ATTS0475,gb|ATTS4362 come from this gene. {Arabidopsis thaliana;} BM080542
17 MZ00018340 TC226189 TM00018340 probable RNA-binding protein, 24808-23340 [imported] - Arabidopsis thaliana {Arabidopsis thaliana;} ^|^GB|AAG51948.1|12323977|AC015450 putative RNA-binding protein; 24808-23340 {Arabidopsis thaliana;} ^|^GB|AAF16655.1|6554473|AC012394 putative RNA-binding protein; 16955-18423 {Arabidopsis thaliana;} TIGR:TC226189
18 MZ00018346 TC240957 TM00018346 contains ESTs AU162691(S20635),AU056495(S20635) similar to Arabidopsis thaliana chromosome 4,At4g33060 unknown protein {Oryza sativa (japonica cultivar-group);} TIGR:TC240957
19 MZ00018364 TC241023 TM00018364 TIGR:TC241023
20 MZ00018370 TC226127 TM00018370 putative AP endonuclease {Sorghum bicolor;} TIGR:TC226127

Total number of rows: 32448

Table truncated, full table size 4222 Kbytes.




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Supplementary data files not provided
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