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Platform GPL6734 Query DataSets for GPL6734
Status Public on Dec 31, 2008
Title China Agricultural University Zea Mays 32K Version B
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Zea mays
Manufacturer Arizona University,Maize Oligonucleotide Array Project
Manufacture protocol http://www.maizearray.org
Spotted oligo array on glass. The whole maize array set similar to 1.1 version contains 55550 unique probes from maize and array A contains 28833 of them. The number of total spots including empty and controls is 32448.
Support glass
 
 
Contributor(s) Gardiner J
Submission date Apr 11, 2008
Last update date Dec 31, 2008
Contact name Guohua Mi
E-mail(s) miguohua@cau.edu.cn
Organization name China Agricultural University
Department Plant Nutrition
Street address Yuan-Ming-Yuan West Rd 2
City Beijing
ZIP/Postal code 100094
Country China
 
Samples (2) GSM281348, GSM281349
Series (1)
GSE11145 Gene expression induced by localized nitrate in a split-root system

Data table header descriptions
ID
Oligo_ID an identifier used by Operon to identify a particular oligo on the array (~58k oligos). Format (eg. MZ00002633
Name The accession of the longest representative sequence that matches the oligo with 100% identity over 100% of the oligo sequence. The sequence can be an Assembled Zea Mays (AZM) genomic sequence (eg. ZM4_13684), a GenBank entry (eg. BG319830), a TIGR Maize Gene Index entry (TC233604) or a Maize Repeat entry (e.g. ZRSgTERTOOT22542).
Tigr.ID an identifier used by TIGR to identify a particular oligo on the array (~58k oligos). Format (eg. TM00013146).
Putative_Annotation The putative annotation for this oligo. The annotation is generated by searching the representative longest sequence against a non-redundant amino acid database. The annotation from the top nraa hit (above certain cutoff (P_value of E-10)) was used as the putative annotation of the oligo. NA means no match was present in the nraa database above the cutoff value.
GB_ACC
SPOT_ID

Data table
ID Oligo_ID Name Tigr.ID Putative_Annotation GB_ACC SPOT_ID
1 MZ00039964 CF042375 TM00039964 OSJNBb0034I13.8 {Oryza sativa (japonica cultivar-group);} CF042375
2 MZ00039970 CF042735 TM00039970 basal layer antifungal peptide {Zea mays;} CF042735
3 MZ00039988 CF043664 TM00039988 putative protein kinase, PF00069 {Oryza sativa (japonica cultivar-group);} CF043664
4 MZ00039994 CF044461 TM00039994 CF044461
5 MZ00040012 CF045335 TM00040012 CF045335
6 MZ00040018 CF045528 TM00040018 putative Golgi SNARE protein {Oryza sativa (japonica cultivar-group);} CF045528
7 MZ00040036 TC233444 TM00040036 pyruvate,orthophosphate dikinase {Zea mays;} TIGR: TC233444
8 MZ00040042 CF046778 TM00040042 CF046778
9 MZ00006180 CA398817 TM00006180 contains ESTs AU173998(S12636),AU173999(S12636) similar to Arabidopsis thaliana chromosome 5, At5g24340 unknown protein {Oryza sativa (japonica cultivar-group);} CA398817
10 MZ00006186 CA398933 TM00006186 response regulator 6 {Zea mays;} CA398933
11 MZ00006204 CA399639 TM00006204 kelch repeat-containing protein -like {Oryza sativa (japonica cultivar-group);} CA399639
12 MZ00006210 CA399866 TM00006210 CA399866
13 MZ00006228 CA400753 TM00006228 CA400753
14 MZ00006234 CA401007 TM00006234 putative potential cadmium/zinc-transporting ATPase 4 {Oryza sativa (japonica cultivar-group);} CA401007
15 MZ00006252 CA401668 TM00006252 putative ACT domain-containing protein {Oryza sativa (japonica cultivar-group);} ^|^GB|BAD09041.1|42407901|AP003925 putative ACT domain-containing protein {Oryza sativa (japonica cultivar-group);} CA401668
16 MZ00006258 TC227937 TM00006258 putative heat shock factor RHSF2 {Oryza sativa (japonica cultivar-group);} ^|^GB|BAD09238.1|42408097|AP004163 putative heat shock factor RHSF2 {Oryza sativa (japonica cultivar-group);} TIGR: TC227937
17 MZ00050341 AZM4_54910 TM00050341 SET-domain transcriptional regulator-like protein {Oryza sativa (japonica cultivar-group);} TIGR: AZM4_54910
18 MZ00050347 AZM4_5505 TM00050347 phragmoplast-associated kinesin-related protein 2 {Arabidopsis thaliana;} ^|^GB|AAL32293.1|16973451|AF320248 phragmoplast-associated kinesin-related protein 2 {Arabidopsis thaliana;} TIGR: AZM4_5505
19 MZ00050365 AZM4_5703 TM00050365 putative phosphoribosylaminoimidazole carboxylase (EC 4.1.1.21) {Oryza sativa (japonica cultivar-group);} ^|^GB|BAB92202.1|20804508|AP003197 putative phosphoribosylaminoimidazole carboxylase (EC 4.1.1.21) {Oryza sativa (japonica cultivar-group);} TIGR: AZM4_5703
20 MZ00050371 AZM4_57558 TM00050371 OSJNBb0004G23.4 {Oryza sativa (japonica cultivar-group);} TIGR: AZM4_57558

Total number of rows: 32448

Table truncated, full table size 3921 Kbytes.




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Supplementary data files not provided
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