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Platform GPL6745 Query DataSets for GPL6745
Status Public on Apr 21, 2008
Title Eppendorf DualChip Human Cancer v1.1
Technology type spotted DNA/cDNA
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Eppendorf AG, Hamburg, Germany
Manufacture protocol Each slide features two identical microarrays, printed side-by-side.
Unique Xmer® probe technology features 200-400 nucleotides long sense DNA.
Each Xmer® is in silico designed and tested in real hybridization experiments.
Catalog number 0038 960 003
Support glass
 
Description No. of genes: 294 (including housekeeping genes)
No. of housekeeping genes: 13
No. of spots per gene: 3
Average spot size: 200 µm
Controls: RNA spiking mixture, housekeeping genes, positive/negative hybridization controls, positive/negative detection controls
No. of spiking RNAs for normalization: 6
 
Web link http://www.eppendorf.de/int/index.php?sitemap=2.1&pb=81160b06d6c190cb&action=products&contentid=1&catalognode=28839&page=15
Contributor(s) Scaruffi P, Moretti S, Cremonesi C, Bonassi S, Tonini G
Citation(s) 16706734
Submission date Apr 16, 2008
Last update date Apr 21, 2008
Contact name PAOLA SCARUFFI
E-mail(s) paola.scaruffi@hsanmartino.it
Organization name "San Martino" Hospital
Lab Center of Physiopathology of Human Reproduction
Street address LARGO R. BENZI, 10
City Genova
State/province GE
ZIP/Postal code 16132
Country Italy
 
Samples (2) GSM281935, GSM282642
Series (1)
GSE11225 Array-comparative genomic hybridization by using DualChip® human cancer 1.1 arrays

Data table header descriptions
ID
Gene Name Official name of the gene represented by the probe
GB_ACC Entrez GenBank Accession Number
SP_ACC Swissprot Accession Number
Aliases (HUGO) A gene symbol, when one is available (from HUGO database)
Aliases (Entrez Gene) A gene symbol, when one is available (from UniGene database)
General Function Gene Ontology Consortium Molecular Function derived from LocusLink
Specific Function Gene Ontology Consortium Specific Function derived from LocusLink
Row Position in the array of the corresponding spot (row number in the array)
Col 1 Position in the array of the corresponding spot (column number in the array)
Col 2 Position in the array of the corresponding spot (column number in the array)
Col 3 Position in the array of the corresponding spot (column number in the array)

Data table
ID Gene Name GB_ACC SP_ACC Aliases (HUGO) Aliases (Entrez Gene) General Function Specific Function Row Col 1 Col 2 Col 3
ADAM17 A disintegrin and metalloproteinase domain 17 (tumor necrosis factor, alpha, converting enzyme) U69611.1 P78536 cSVP, CD156B, TACE CD156b, MGC71942, TACE, cSVP Notch signaling pathway / Epithelial cell signaling in Helicobacter pyloriinfection Implicated in a variety of biologic processes involving cell-cell and cell-matrix interactions, including fertilization, muscle development, and neurogenesis 1 3 14 25
ADAM9 A disintegrin and metalloproteinase domain 9 (meltrin gamma) NM_003816.1 Q13443 MDC9, KIAA0021, MCMP, Mltng KIAA0021, MCMP, MDC9, Mltng Protein kinase cascade Implicated in a variety of biological processes involving cell-cell and cell-matrix interactions, including fertilization, muscle development, and neurogenesis 1 4 15 26
ABI2 Abl-interactor 2 NM_005759.3 Q9NYB9 ABI-2, AIP-1, ABI2B, AblBP3, argBPIA, SSH3BP2 ABI-2, ABI2B, AIP-1, AblBP3, SSH3BP2, argBPIA, argBPIB Regulation of actin cytoskeleton Cytoskeleton organization and biogenesis 1 5 16 27
ACVRL1 Activin A receptor type II-like 1 NM_000020.1 P37023 HHT2, ALK1, HHT, ACVRLK1, ORW2 ACVRLK1, ALK-1, ALK1, HHT, HHT2, ORW2, SKR3 TGF-beta signaling pathway Type I cell-surface receptor for the TGF-beta superfamily 1 6 17 28
A2M Alpha-2-macroglobulin NM_000014.3 P01023 FWP007, S863-7, CPAMD5 CPAMD5, DKFZp779B086, FWP007, S863-7, alpha 2M Complement and coagulation cascades / Alzheimer's disease Protease inhibitor and cytokine transporter 1 7 18 29
AREG Amphiregulin (schwannoma-derived growth factor) NM_001657.1 P15514 SDGF AR, CRDGF, MGC13647, SDGF Cell proliferation Growth factor activity 1 8 19 30
ANGPT1 Angiopoietin 1 U83508.1 Q15389 KIAA0003 AGP1, AGPT, ANG1 Cell differentiation Roles in vascular development and angiogenesis 1 9 20 31
ATM Ataxia telangiectasia mutated (includes complementation groups A, C and D) U26455.1 Q13315 ATA, ATDC, ATC, ATD, TEL1 AT1, ATA, ATC, ATD, ATDC, ATE, DKFZp781A0353, MGC74674, TEL1 Cell cycle / Apoptosis / Toll-like receptor signaling pathway Important cell cycle checkpoint kinase 1 10 21 32
ABCC1 ATP-binding cassette, sub-family C (CFTR/MRP), member 1 AJ003198.1 P33527 GS-X, MRP, MRP1 ABC29, ABCC, DKFZp781G125, GS-X, MRP, MRP1 ABC transporters - General Multispecific organic anion transporter 1 11 22 33
AXL AXL receptor tyrosine kinase M76125.1 P30530 UFO UFO Signal transduction Involved in the stimulation of cell proliferation 2 2 13 24
BIRC5 Baculoviral IAP repeat-containing 5 (survivin) NM_001168.1 O15392 EPR-1, API4 API4, EPR-1 Apoptosis Prevents apoptotic cell death 2 3 14 25
BSG Basigin (OK blood group) NM_001728.1 P35613 EMMPRIN, CD147, OK 5F7, CD147, EMMPRIN, M6, OK, TCSF Extracellular matrix inducer Involved in various immunologic phenomena, differentiation, and development 2 4 15 26
BCL2 B-cell CLL/lymphoma 2 NM_000633.1 P10415 Bcl-2 Bcl-2 Neurodegenerative Disorders / Apoptosis / Focal adhesion / Amyotrophic lateral sclerosis (ALS) / Prion disease Blocks the apoptotic death of some cells such as lymphocytes 2 5 16 27
BAD BCL2-antagonist of cell death NM_004322.2 Q92934 BCL2L8, BBC2 BBC2, BCL2L8 Neurodegenerative Disorders / Apoptosis / Focal adhesion / Insulin signaling pathway / Amyotrophic lateral sclerosis (ALS) Proapoptotic activity 2 7 18 29
BAK1 BCL2-antagonist/killer 1 U16811.1 Q16611 BCL2L7, CDN1 BAK, BCL2L7, CDN1, MGC117255 Apoptosis Apoptotic mitochondrial changes 2 8 19 30
BAX BCL2-associated X protein NM_004324.1 Q8WXU1 / Bax zeta Neurodegenerative Disorders / Apoptosis / Amyotrophic lateral sclerosis (ALS) Involved in a wide variety of cellular activities 2 9 20 31
BIK BCL2-interacting killer (apoptosis-inducing) NM_001197.3 Q13323 NBK, BBC1 BBC1, BIP1, BP4, NBK Apoptosis Target for antiapoptotic proteins 2 10 21 32
BCL2L2 BCL2-like 2 NM_004050.2 Q92843 KIAA0271, BCL-W BCL-W, BCLW, KIAA0271 Apoptosis Acts as anti- and pro-apoptotic regulators 3 1 12 23
BCL2A1 BCL2-related protein A1 NM_004049.2 Q16548 GRS, BFL1, BCL2L5, HBPA1 BCL2L5, BFL1, GRS, HBPA1 Apoptosis Reduces the release of pro-apoptotic cytochrome c from mitochondria and block caspase activation 3 2 13 24
BGN Biglycan NM_001711.3 P21810 DSPG1, SLRR1A DSPG1, PG-S1, PGI, SLRR1A Extracellular matrix Function in connective tissue metabolism 3 4 15 26

Total number of rows: 293

Table truncated, full table size 64 Kbytes.




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