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| Status |
Public on May 25, 2008 |
| Title |
AFFYMETRIX Human ENCODE Chromosomes 1,2,4,5,6,7,8,9,10,11,12,13,14,15,16,18,19,20,21,X v2.0 |
| Technology type |
in situ oligonucleotide |
| Distribution |
non-commercial |
| Organism |
Homo sapiens |
| Manufacturer |
Affymetrix |
| Manufacture protocol |
Affymetrix standard array manufacture protocol. Please refer to http://www.affymetrix.com/technology/manufacturing/index.affx for details.
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| Support |
glass |
| Coating |
unknown |
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| Web link |
http://genome.imim.es/datasets/racearrays2007/
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| Submission date |
May 13, 2008 |
| Last update date |
May 25, 2008 |
| Contact name |
Thomas R Gingeras |
| E-mail(s) |
tom_gingeras@affymetrix.com
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| Organization name |
Affymetrix, Inc.
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| Street address |
3380 Central Expressway
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| City |
Santa Clara |
| State/province |
CA |
| ZIP/Postal code |
95051 |
| Country |
USA |
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| Samples (120)
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GSM290144, GSM290145, GSM290146, GSM290147, GSM290148, GSM290149
GSM290150, GSM290151, GSM290152, GSM290153, GSM290155, GSM290156, GSM290157, GSM290158, GSM290159, GSM290160, GSM290161, GSM290162, GSM290163, GSM290164, GSM290165, GSM290166, GSM290167, GSM290168, GSM290169, GSM290170, GSM290171, GSM290172, GSM290173, GSM290174, GSM290175, GSM290176, GSM290177, GSM290178, GSM290179, GSM290180, GSM290181, GSM290182, GSM290183, GSM290184, GSM290185, GSM290187, GSM290188, GSM290189, GSM290190, GSM290191, GSM290192, GSM290193, GSM290194, GSM290195, GSM290196, GSM290197, GSM290198, GSM290199, GSM290201, GSM290202, GSM290203, GSM290204, GSM290205, GSM290206, GSM290207, GSM290208, GSM290209, GSM290210, GSM290211, GSM290212, GSM290213, GSM290214, GSM290215, GSM290216, GSM290217, GSM290218, GSM290219, GSM290220, GSM290221, GSM290222, GSM290223, GSM290224, GSM290225, GSM290226, GSM290227, GSM290228, GSM290229, GSM290230, GSM290231, GSM290232, GSM290233, GSM290234, GSM290235, GSM290236, GSM290237, GSM290238, GSM290239, GSM290240, GSM290241, GSM290242, GSM290243, GSM290244, GSM290245, GSM290246, GSM290247, GSM290248, GSM290249, GSM290250, GSM290251, GSM290252, GSM290253, GSM290254, GSM290255, GSM290256, GSM290257, GSM290258, GSM290259, GSM290260, GSM290261, GSM290262, GSM290263, GSM290264, GSM290265, GSM290266
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| Series (1) |
| GSE11433 |
Efficient targeted transcript discovery via array-based normalization of RACE libraries |
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| Data table header descriptions |
| ID |
chip_coord_genomic_coord |
| CHIP_COORD |
chip coordinate |
| SEQUENCE |
probe sequence |
| RANGE_GB |
chromosome accession and version upon which probes are mapped |
| RANGE_START |
start position of mapped probe relative to RANGE_GB |
| RANGE_END |
end position of mapped probe relative to RANGE_GB |
| RANGE_STRAND |
chromosomal strand |
| Data table |
| ID |
CHIP_COORD |
SEQUENCE |
RANGE_GB |
RANGE_START |
RANGE_END |
RANGE_STRAND |
| x1231_y687_chr1_147971134 |
x1231_y687 |
GTTGACCTTTCGAGGCCTTAAGCTC |
NC_000001.8 |
147971134 |
147971158 |
- |
| x1923_y519_chr1_147971141 |
x1923_y519 |
TTTCGAGGCCTTAAGCTCTTGAGAG |
NC_000001.8 |
147971141 |
147971165 |
- |
| x987_y2034_chr1_147971148 |
x987_y2034 |
GCCTTAAGCTCTTGAGAGGTTCCTG |
NC_000001.8 |
147971148 |
147971172 |
- |
| x1031_y1687_chr1_147971155 |
x1031_y1687 |
GCTCTTGAGAGGTTCCTGAGGACAG |
NC_000001.8 |
147971155 |
147971179 |
- |
| x193_y74_chr1_147971162 |
x193_y74 |
AGAGGTTCCTGAGGACAGATTGGAA |
NC_000001.8 |
147971162 |
147971186 |
- |
| x901_y181_chr1_147971169 |
x901_y181 |
CCTGAGGACAGATTGGAATCAGATA |
NC_000001.8 |
147971169 |
147971193 |
- |
| x327_y1724_chr1_147971176 |
x327_y1724 |
ACAGATTGGAATCAGATACTGGGGA |
NC_000001.8 |
147971176 |
147971200 |
- |
| x1421_y929_chr1_147971183 |
x1421_y929 |
GGAATCAGATACTGGGGAACAGAAG |
NC_000001.8 |
147971183 |
147971207 |
- |
| x51_y1577_chr1_147971191 |
x51_y1577 |
ATACTGGGGAACAGAAGAAGTCAGG |
NC_000001.8 |
147971191 |
147971215 |
- |
| x1417_y1439_chr1_147971198 |
x1417_y1439 |
GGAACAGAAGAAGTCAGGAGAAATA |
NC_000001.8 |
147971198 |
147971222 |
- |
| x439_y555_chr1_147971205 |
x439_y555 |
AAGAAGTCAGGAGAAATATGAGGAT |
NC_000001.8 |
147971205 |
147971229 |
- |
| x629_y641_chr1_147971212 |
x629_y641 |
CAGGAGAAATATGAGGATCTCAATG |
NC_000001.8 |
147971212 |
147971236 |
- |
| x497_y1459_chr1_147971219 |
x497_y1459 |
AATATGAGGATCTCAATGAGAGAAA |
NC_000001.8 |
147971219 |
147971243 |
- |
| x1393_y2009_chr1_147971226 |
x1393_y2009 |
GGATCTCAATGAGAGAAAACTAGCA |
NC_000001.8 |
147971226 |
147971250 |
- |
| x475_y380_chr1_147971233 |
x475_y380 |
AATGAGAGAAAACTAGCATTGCCAG |
NC_000001.8 |
147971233 |
147971257 |
- |
| x1119_y1244_chr1_147971240 |
x1119_y1244 |
GAAAACTAGCATTGCCAGAAATGGA |
NC_000001.8 |
147971240 |
147971264 |
- |
| x235_y1285_chr1_147971247 |
x235_y1285 |
AGCATTGCCAGAAATGGAAGTGGCA |
NC_000001.8 |
147971247 |
147971271 |
- |
| x953_y1353_chr1_147971254 |
x953_y1353 |
CCAGAAATGGAAGTGGCATAGGGAG |
NC_000001.8 |
147971254 |
147971278 |
- |
| x1463_y681_chr1_147971261 |
x1463_y681 |
TGGAAGTGGCATAGGGAGTACTGGG |
NC_000001.8 |
147971261 |
147971285 |
- |
| x1431_y984_chr1_147971268 |
x1431_y984 |
GGCATAGGGAGTACTGGGACCTGAT |
NC_000001.8 |
147971268 |
147971292 |
- |
Total number of rows: 2143632
Table truncated, full table size 200243 Kbytes.
| Supplementary data files not provided |
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